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GEO accession:
Sample GSM100892
Query DataSets for GSM100892
Status
Public on May 26, 2006
Title
Acromegaly case A16
Sample type
RNA
Source name
blood
Organism
Homo sapiens
Characteristics
peripheral blood
Extracted molecule
total RNA
Extraction protocol
Total RNA extracted from whole blood with PAXgene Blood RNA Kit (PreAnalytiX) and concentrated with RNeasy MinElute Cleanup columns (Qiagen).
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
peripheral blood
Data processing
Affymetrix GeneChip® Operating Software (GCOS)
Submission date
Mar 16, 2006
Last update date
Aug 28, 2018
Contact name
Antti Kokko
Organization name
University of Helsinki
Department
Dept of Medical Genetics
Lab
Tumorigenesis group
Street address
POBOX 63 (Haartmaninkatu 8)
City
Helsinki
ZIP/Postal code
00014 University of Helsinki
Country
Finland
Platform ID
GPL570
Series (2)
GSE4488
Expression data from whole blood
GSE6351
Expression data from peripheral blood from healthy and predisposed individuals
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
VALUE
GCOS-calculated Signal intensity
Data table
ID_REF
ABS_CALL
DETECTION P-VALUE
VALUE
AFFX-BioB-5_at
P
0.00141
131.6
AFFX-BioB-M_at
P
0.000052
469.1
AFFX-BioB-3_at
P
0.000509
207.7
AFFX-BioC-5_at
P
0.00006
628.8
AFFX-BioC-3_at
P
0.000052
896.1
AFFX-BioDn-5_at
P
0.000081
819.9
AFFX-BioDn-3_at
P
0.000052
2656.1
AFFX-CreX-5_at
P
0.000044
8011.7
AFFX-CreX-3_at
P
0.000044
12426.4
AFFX-DapX-5_at
P
0.000052
496.5
AFFX-DapX-M_at
P
0.00039
1137.6
AFFX-DapX-3_at
P
0.000052
1476
AFFX-LysX-5_at
P
0.000258
54.9
AFFX-LysX-M_at
P
0.004998
121.4
AFFX-LysX-3_at
P
0.00006
261.1
AFFX-PheX-5_at
P
0.000095
102.5
AFFX-PheX-M_at
P
0.000095
122.6
AFFX-PheX-3_at
P
0.00011
124.1
AFFX-ThrX-5_at
P
0.000169
149
AFFX-ThrX-M_at
P
0.000147
204.3
Total number of rows:
54675
Table truncated, full table size
1410 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM100892.CEL.gz
8.0 Mb
(ftp)
(http)
CEL
GSM100892.EXP.gz
507 b
(ftp)
(http)
EXP
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