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| Status |
Public on Sep 13, 2012 |
| Title |
Broad_ChipSeq_K562_HDAC1_(SC-6298) |
| Sample type |
SRA |
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| Source name |
K562
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| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: goat polyclonal IgG, 200 micrograms/ml, epitope mapping at the C-terminus of HDAC1 of human origin. Antibody Target: HDAC1
antibody targetdescription: Histone deacetylase 1 (HDAC1) is a class I histone deacetylase that catalyzes the removal of the acetyl group on lysine residues of the N-terminus of the core histones H2A, H2B, H3, and H4. HDAC1 is a component of multiple deacetylating complexes such as Sin3, NuRD, and CoRest that function to repress gene transcription. Alternate names for HDAC1 include RPD3L1, HD1, GON-10, and DKFZp686H12203.
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-6298
controlid: wgEncodeEH000052
replicate: 1,2
softwareversion: ScriptureVPaperR3
cell sex: F
antibody: HDAC1_(SC-6298)
antibody antibodydescription: goat polyclonal IgG, 200 micrograms/ml, epitope mapping at the C-terminus of HDAC1 of human origin. Antibody Target: HDAC1
antibody targetdescription: Histone deacetylase 1 (HDAC1) is a class I histone deacetylase that catalyzes the removal of the acetyl group on lysine residues of the N-terminus of the core histones H2A, H2B, H3, and H4. HDAC1 is a component of multiple deacetylating complexes such as Sin3, NuRD, and CoRest that function to repress gene transcription. Alternate names for HDAC1 include RPD3L1, HD1, GON-10, and DKFZp686H12203.
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-6298
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: K562/Input/std
softwareversion: ScriptureVPaperR3
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| Biomaterial provider |
ATCC
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| Treatment protocol |
None
|
| Growth protocol |
K562_protocol.pdf
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer IIx |
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| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
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| Submission date |
Sep 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
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| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
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| Platform ID |
GPL10999 |
| Series (2) |
| GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
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| Relations |
| SRA |
SRX186644 |
| BioSample |
SAMN01174060 |
| Named Annotation |
GSM1003448_hg19_wgEncodeBroadHistoneK562Hdac1sc6298StdSig.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1003448_hg19_wgEncodeBroadHistoneK562Hdac1sc6298StdPk.broadPeak.gz |
2.4 Mb |
(ftp)(http) |
BROADPEAK |
| GSM1003448_hg19_wgEncodeBroadHistoneK562Hdac1sc6298StdSig.bigWig |
457.6 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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