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Sample GSM1003 Query DataSets for GSM1003
Status Public on Feb 12, 2002
Title DBYyap1- + 0.3 mM H2O2 (20 min)
Sample type RNA
 
Channel 1
Source name time = 0 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 20 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11-21
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 227 81 803 570 452 123 118 164 628 792 .629 0 -.355 .544 72 60 1.777 1.279 .563 .782 .373 990 225 44 61 155 172 -.355
2 247 96 246 213 99 119 114 158 138 296 .4 0 -.834 .301 51 35 2.485 1.783 .402 .561 .221 731 225 44 61 172 189 -.834
3 243 95 987 751 636 123 115 160 883 1043 .68 0 -.161 .575 68 53 1.552 1.118 .644 .895 .445 746 225 44 61 190 207 -.161
4 222 80 194 172 56 126 116 161 78 239 .312 0 -1.315 .225 43 26 3.464 2.487 .289 .402 .103 746 225 44 61 208 225 -1.315
5 203 75 635 419 306 121 113 157 425 582 .811 0 -.579 .437 62 48 2.075 1.494 .482 .669 .438 792 225 44 61 226 243 -.579
6 210 82 240 159 49 118 110 153 68 221 .53 0 -1.819 .246 48 27 4.898 3.529 .204 .283 .152 793 225 44 61 246 263 -1.819
7 217 72 160 118 5 118 113 157 7 164 -.028 0 -4.515 .189 44 13 32 22.857 .031 .044 -.005 743 225 44 61 264 281 -4.515
8 222 79 210 123 9 119 114 158 13 171 .046 0 -4.014 .137 50 15 23.333 16.154 .043 .062 .007 756 225 44 61 281 298 -4.014
9 220 82 147 118 1 123 117 163 1 164 .035 0 -7.2 .121 44 11 147 147 .007 .007 .006 781 225 44 61 299 316 -7.2
10 234 82 167 120 5 122 115 160 7 167 -.001 0 -4.576 .146 44 14 33.4 23.857 .03 .042 0 781 225 44 61 317 334 -4.576
11 282 103 200 155 42 127 113 157 58 215 .641 0 -1.786 .256 42 27 4.762 3.448 .21 .29 .195 771 225 44 61 335 352 -1.786
12 267 98 88 110 125 110 153 153 -.037 0 .206 35 10 -.007 771 225 44 61 353 370
13 218 86 101 117 6 119 111 154 9 163 .082 0 -3.488 .156 38 16 16.833 11.222 .059 .089 .016 782 225 44 61 371 388 -3.488
14 247 94 151 117 122 117 163 163 -.077 0 .133 43 10 -.011 767 225 44 61 389 406
15 240 93 122 120 5 122 115 160 7 167 -.055 0 -4.123 .132 36 14 24.4 17.429 .041 .057 -.009 736 225 44 61 406 423 -4.123
16 244 91 147 121 8 122 113 157 11 168 .011 0 -3.74 .143 40 16 18.375 13.364 .054 .075 .002 736 225 44 61 423 440 -3.74
17 249 100 145 124 10 121 114 158 14 172 -.087 0 -3.373 .165 36 16 14.5 10.357 .069 .097 -.014 766 225 44 61 440 457 -3.373
18 223 91 158 116 2 120 114 158 3 161 -.052 0 -5.719 .174 41 9 79 52.667 .013 .019 -.007 781 225 44 61 458 475 -5.719
19 223 85 177 121 6 120 115 160 8 168 -.118 0 -4.468 .235 48 12 29.5 22.125 .034 .045 -.019 746 225 45 62 476 493 -4.468
20 239 88 170 128 12 120 116 161 17 178 .103 0 -3.322 .116 45 17 14.167 10 .071 .1 .016 735 225 45 62 494 511 -3.322

Total number of rows: 9216

Table truncated, full table size 1135 Kbytes.




Supplementary data files not provided
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