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Sample GSM1001435 Query DataSets for GSM1001435
Status Public on Jun 16, 2015
Title FCI-P2p [MIP]
Sample type genomic
 
Source name Ovarian cell line
Organism Homo sapiens
Characteristics histology: Papillary Serous
sample origin: Primary
sample type: fresh
Treatment protocol None
Growth protocol Cells were grown in 10cm dishes and extracts were harvested at 80% confluency
Extracted molecule genomic DNA
Extraction protocol Cell monolayers were lysed directly in RLT+ buffer and homogenized with Qiashredder columns (Qiagen Allprep kit).
Label Biotin
Label protocol Labeling was performed by Affymetrix according to the platform protocol
 
Hybridization protocol Hybridization was performed by Affymetrix according to the platform protocol
Scan protocol Scanning was performed by Affymetrix
Description A/T Array: a520683-00-805770-070211-4108258-85161.CEL
C/G Array: a520683-00-805770-070211-4108258-85120.CEL
Data processing Data processing was performed by Affymetrix
Tables contain signal A intensity and signal B intensity, copynumber, Allele Ratio and Allelic Difference as provided by Affymetrix
 
Submission date Sep 11, 2012
Last update date Jun 16, 2015
Contact name Tan A Ince
E-mail(s) Tince@med.miami.edu
Phone 305-243-1782
Organization name University of Miami - Miller School of Medicine
Department Sylvester Cancer Center
Lab Dr. Ince Lab - TCC
Street address 1501 NW 10th Avenue, Rm 926
City Miami
State/province FL
ZIP/Postal code 33136
Country USA
 
Platform ID GPL13270
Series (2)
GSE40786 Characterization of novel ovarian tumor cell lines that retain the phenotype of primary tumors [MIP]
GSE40788 Characterization of novel ovarian tumor cell lines that retain the phenotype of primary tumors

Data table header descriptions
ID_REF
VALUE copy number
Copy_A
Copy_B
AlleleRatio
AllelicDifference

Data table
ID_REF VALUE Copy_A Copy_B AlleleRatio AllelicDifference
amp184660 1.6666 1.662 0.0046 0.0028 0.9945
amp947 3.5272 3.5058 0.0214 0.0061 0.9878
amp53303 2.7865 2.7836 0.003 0.0011 0.9979
amp364886 1.7464 1.7221 0.0242 0.0141 0.9722
amp121615 1.2581 0.4602 0.7978 0.5769 -0.2683
amp288732 1.4765 1.4272 0.0493 0.0345 0.9333
amp358123 0.4524 0.3016 0.1508 0.4999 0.3334
amp70940 1.7455 0.7475 0.998 0.749 -0.1435
amp329597 1.471 0.7513 0.7197 0.9579 0.0215
amp264443 1.3345 1.3388 -0.0043 -0.0032 1.0064
amp288493 1.8629 1.8295 0.0335 0.0183 0.9641
tag101400 0.9645 0.956 0.0085 0.0089 0.9824
amp950 1.2247 1.2499 -0.0252 -0.0201 1.0411
amp302726 1.4533 1.0547 0.3986 0.378 0.4514
amp268551 1.0896 1.4484 -0.3588 -0.2477 1.6587
amp340063 1.0632 1.0729 -0.0098 -0.0091 1.0184
amp143245 1.2433 0.0138 1.2295 0.0112 -0.9778
amp253174 1.644 1.616 0.028 0.0174 0.9659
amp298357 1.5655 0.9905 0.575 0.5805 0.2654
amp365288 1.29 1.2262 0.0638 0.0521 0.901

Total number of rows: 330007

Table truncated, full table size 14532 Kbytes.




Supplementary file Size Download File type/resource
GSM1001435_a520683-00-805770-070211-4108258-85120.CEL.gz 4.9 Mb (ftp)(http) CEL
GSM1001435_a520683-00-805770-070211-4108258-85161.CEL.gz 5.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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