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Series GSE99624 Query DataSets for GSE99624
Status Public on Mar 13, 2018
Title Primary osteoporosis is not reflected by disease-specific DNA methylation or accelerated epigenetic age in blood
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Osteoporosis is an age-related metabolic bone disease. Hence, osteoporotic patients might suffer from molecular features of accelerated aging, which is generally reflected by specific age-associated DNA methylation (DNAm) changes. In this study, we analyzed genome wide DNAm profiles of peripheral blood from patients with manifest primary osteoporosis and non-osteoporotic controls. Statistical analysis did not reveal any individual CG dinucleotides (CpG sites) with significant aberrant DNAm in osteoporosis. Subsequently, we analyzed if age-associated DNAm patterns are increased in OP. Using three independent age-predictors we did not find any evidence for accelerated epigenetic age in blood of osteoporotic patients. Taken together, osteoporosis is not reflected by characteristic DNAm patterns of peripheral blood that might be used as biomarker for the disease. The prevalence of osteoporosis is age-associated – but it is not associated with premature epigenetic aging in peripheral blood.
 
Overall design Illumina Infinium 450k Human Methylation Beadchip analysis of whole peripheral blood from primary osteoporotic patients and control individuals.
 
Contributor(s) Fernandez-Rebollo E, Eipel M, Seefried L, Hofmann P, Strathmann K, Jakob F, Wagner W
Citation(s) 28926142
Submission date Jun 02, 2017
Last update date Jul 25, 2021
Contact name Wolfgang Wagner
E-mail(s) wwagner@ukaachen.de
Phone +49 241 8088611
Organization name RWTH Aachen University
Department Helmholtz Institute for Biomedical Engineering
Lab Stem Cell Biology and Cellular Engineering
Street address Pauwelsstrasse 20
City Aachen
ZIP/Postal code 52074
Country Germany
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (48)
GSM2648834 DNAm_sample1
GSM2648835 DNAm_sample2
GSM2648836 DNAm_sample3
Relations
BioProject PRJNA389099

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99624_RAW.tar 575.7 Mb (http)(custom) TAR (of IDAT)
Processed data included within Sample table

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