|
| Status |
Public on Mar 06, 2019 |
| Title |
Transcriptome analysis of mycorrhizal Sesbania cannabina reveals insight into the tolerance to salt stress |
| Organism |
Sesbania cannabina |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
To better understand the molecular mechanisms of the response of arbuscular mycorrhizal S. cannabina to salt stress, the transcriptional profile in both mycorrhizal and non-mycorrhizal Sesbania cannabina subjected to 3 and 27 hours NaCl treatment respectively were performed using the Illumina HiSeq™ 2000 sequencing platform (Illumina Inc., San Diego, CA, USA). Bioinformatic analysis of transcriptome data was performed to allow identification and functional annotation of differentially expressed genes (DEGs). By comparing the different genes appeared in control and treatment groups, we can learn more about the species-specific responses employed by S. cannabina and find novel associated genes or strategies in mycorrhizal plant under salt stress.
|
| |
|
| Overall design |
Leaf and root mRNA profiles of 30-day old mycorrhizal and non-mycorrhizal S. cannabina (control), 3h and 27h NaCl treatment were generated by deep sequencing, in duplicate, using Illumina HiSeq 2000.
|
| |
|
| Contributor(s) |
Ren C, Kong C |
| Citation(s) |
30808908 |
| |
| Submission date |
Jun 01, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
cheng-gang ren |
| E-mail(s) |
cgren@yic.ac.cn
|
| Organization name |
Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, China
|
| Street address |
17 Chunhui Road, Laishan District
|
| City |
yantai |
| State/province |
shandong |
| ZIP/Postal code |
264003 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL22825 |
Illumina HiSeq 2000 (Sesbania cannabina) |
|
| Samples (24)
|
|
| Relations |
| BioProject |
PRJNA388749 |
| SRA |
SRP108408 |
Less...
More...