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Series GSE99401 Query DataSets for GSE99401
Status Public on Jun 26, 2018
Title MiR-34a controls proliferation and plasticity of early-progenitors in the normal mammary gland and in breast cancer
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The miR-34 is a tumor-suppressor miRNA family involved in various human cancers, including breast. However, the role of such miRNAs in the control of mammary stem cells (MaSCs), early-progenitors and their tumor counterparts, (CSCs) lies largely unexplored. Here, we identified miR-34a as directly regulated by TP53 in primary mouse mammospheres. Expression of miR-34a is induced upon luminal commitment and differentiation and able to inhibit the expansion of the MaSCs/early-progenitor pool in a p53-independent fashion. Loss of function approaches revealed that miR-34 negatively controls both proliferation and fate commitment in mammary progenitors by modulating several pathways involved in epithelial cell plasticity and luminal-to-basal conversion. In particular, miR-34a negatively regulates Wnt/b-catenin signaling pathway, targeting multiple upstream regulators and, thus, modulating the expansion of the MaSCs/early-progenitor pool. These multiple roles of miR-34a were maintained in a model of human breast cancer, where chronic expression of miR-34a in triple-negative mesenchymal-like cells (enriched in CSCs) reduced tumor growth, restricted CSC pool and inhibited tumor propagation by promoting a luminal-like differentiation program.
 
Overall design gene expression by deep-sequencing in mammary epithelial undifferentiated Sca high cells, differentiatied Sca low cells and in Sca high cells upon miR-34a induction. Each sample is analyzed in triplicate
 
Contributor(s) Bonetti P, Marzi MJ, Nicassio F
Citation(s) 30093634
Submission date May 30, 2017
Last update date May 15, 2019
Contact name Francesco Nicassio
E-mail(s) francesco.nicassio@iit.it
Organization name Istituto Italiano di Tecnologia
Department Center for genomic science
Street address Via Adamello 16
City Milano
ZIP/Postal code 20139
Country Italy
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (12)
GSM2643524 SCA+-1
GSM2643525 SCA+-2
GSM2643526 SCA+-3
Relations
BioProject PRJNA388393
SRA SRP108253

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Supplementary file Size Download File type/resource
GSE99401_GEO_Bonetti_CommaDB_raw_reads.xlsx 10.3 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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