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Series GSE99231 Query DataSets for GSE99231
Status Public on Jan 29, 2018
Title ZFR coordinates crosstalk between RNA decay and transcription in innate immunity
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Identification of RNAs differentially expressed upon ZFR knockdown in THP1 and HEK-293TO cells.
Overall design Paired-end RNA-Seq on THP1 cells treated with ZFR-specific or control shRNAs and HEK-293TO cells treated with ZFR-specific or control siRNAs.
Contributor(s) Haque N, Hogg JR
Citation(s) 29559679
Submission date May 23, 2017
Last update date May 15, 2019
Contact name J Robert Hogg
Organization name National Heart, Lung and Blood Institute
Department Biochemistry and Biophysics Center
Lab Hogg Lab
Street address 50 South Drive, #2239
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platforms (2)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (18)
GSM2636348 HEK-293TO-si-NS-1
GSM2636349 HEK-293TO-si-NS-2
GSM2636350 HEK-293TO-si-NS-3
BioProject PRJNA387607
SRA SRP107875

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99231_293_DESEQ2.txt.gz 1.5 Mb (ftp)(http) TXT
GSE99231_THP-1_DESEQ2.dat.gz 663.3 Kb (ftp)(http) DAT
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Raw data are available in SRA
Processed data are available on Series record

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