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Series GSE99124 Query DataSets for GSE99124
Status Public on May 22, 2017
Title SNP genotype data from induced Pluripotent Stem cells from healthy control donors
Organism Homo sapiens
Experiment type SNP genotyping by SNP array
Summary We have generated human induced Pluripotent Stem cells (hiPSc) using Retroviral or Sendai virus-mediated delivery of reprogramming factors. hiPSc lines have been screened using SNP array to assess chromosomal stability (alongside the fibroblast lines from which they derived), and validation of the pluripotency of the hiPSc lines is provided by Pluritest assessment of transcriptome datasets, prior to differentiation and downstream assays.
MAPT genetic variation and neuronal maturity alter isoform expression affecting axonal transport in iPSC-derived dopamine neurons. Joel E Beevers, Mang-Ching Lai, Heather A Booth, Federico Zambon, Laura Parkkinen, Jane Vowles, Sally A Cowley, Richard Wade-Martins, Tara M Caffrey. Stem Cell Reports 2017
Overall design human iPSc lines were derived from human dermal fibroblasts from 3 control donors (newly-derived lines are reported here; for lines that have been previously described and for fibroblasts from which lines have been derived, refer to current manuscript for relevant references). SNP and gene expression datasets were generated.
Contributor(s) Beevers JE, Lai M, Booth HA, Zambon F, Parkkinen L, Vowles J, Cowley SA, Wade-Martins R, Caffrey TM
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Submission date May 21, 2017
Last update date Jan 24, 2018
Contact name Sally A Cowley
Phone +44 (0) 1865 275600
Organization name University of Oxford
Department Sir William Dunn School of Pathology
Lab James Martin Stem Cell Facility
Street address South Parks Road
City Oxford
ZIP/Postal code OX1 3RE
Country United Kingdom
Platforms (2)
GPL13829 Illumina HumanCytoSNP-12 v2.1 BeadChip
GPL21168 HumanOmniExpress-24 v1.0 BeadChip [SNP_ID version]
Samples (3)
GSM2633786 AH016-6 [SNP genotype]
GSM2633787 AH016-10 [SNP genotype]
GSM2633788 SFC841-03-02 [SNP genotype]
This SubSeries is part of SuperSeries:
GSE99125 Gene Expression and SNP genotype data from induced Pluripotent Stem cells from healthy control donors
BioProject PRJNA387381

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99124_non_normalized_GSM2633786-87.txt.gz 8.8 Mb (ftp)(http) TXT
GSE99124_non_normalized_GSM2633788.txt.gz 11.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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