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Series GSE99078 Query DataSets for GSE99078
Status Public on Jul 20, 2017
Title Induced pluripotent stem cell-derived primitive macrophages as a cellular platform to model tissue-resident macrophage differentiation and function
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Specialized tissue macrophages arise during embryogenesis from yolk-sac (YS) progenitors that migrate into developing tissues and terminally differentiate in situ. Until recently, it has been impossible to isolate or derive sufficient numbers of YS-derived macrophages for further study, but data now suggest that induced pluripotent stem cells (iPSCs) can be driven to undergo a process reminiscent of YS-hematopoiesis in vitro. We asked whether iPSC-derived primitive macrophages (iMac) can terminally differentiate into specialized macrophages using growth factors and organ-specific cues. Co-culturing murine iMac with iPSC-derived neurons promoted differentiation into microglia-like cells in vitro. Furthermore, murine iMac differentiated in vivo into microglia following injection into the brain, and functional alveolar macrophages after engraftment in the lung.
 
Overall design 24 samples, 12 iMac/iMicro, 12 BM-Mac/BM-Micro. Macrophages were analysed at 4 time points (day 0, 3, 6, 12), with 3 independent replicates for each time point. Non-cocultured samples from the same batch (Day 0 iMac/BM-Mac) were used as controls for the experiment.
 
Contributor(s) Takata K, Kozaki T, Lee CZ, Otsuka M, Lee B, Ginhoux F
Citation(s) 28723550
Submission date May 18, 2017
Last update date May 15, 2019
Contact name Bernett Lee
E-mail(s) bernett_lee@immunol.a-star.edu.sg
Organization name Singapore Immunology Network
Street address 8A Biomedical Grove #03-06 Immunos
City NA
ZIP/Postal code 138648
Country Singapore
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (24)
GSM2631964 iPSC Macrophage Day 00 No 1
GSM2631965 iPSC Macrophage Day 03 Yes 1
GSM2631966 iPSC Macrophage Day 06 Yes 1
Relations
BioProject PRJNA387198
SRA SRP107345

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99078_gene_counts.txt.gz 3.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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