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Series GSE98884 Query DataSets for GSE98884
Status Public on Jul 11, 2017
Title Anti-inflammatory effect of indoleacrylic acid (IA)
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Host factors in the intestine, such as mucus secretion, play an important role in selecting for the colonization of bacteria that contribute to intestinal health. Here we characterized the capability of commensal species to cleave and transport mucin-associated monosaccharides and found that several members of the Clostridiales order can utilize intestinal mucins as an energy source. One such mucin utilizer, Peptostreptococcus russellii, reduces susceptibility to epithelial injury in mice. Several Peptostreptococcus species contain a gene cluster that enables the production of the tryptophan metabolite indoleacrylic acid (IA), which we show has a beneficial effect on intestinal epithelial barrier function and mitigates inflammatory responses. Furthermore, metagenomic analysis of human stool samples revealed that the genetic capability of microbes to utilize mucins and metabolize tryptophan was diminished in patients with inflammatory bowel disease. Our data suggest that stimulating the production of IA to promote anti-inflammatory responses could have therapeutic benefit.
 
Overall design Isolated hPBMCs treated with IA or 0.1% DMSO followed by LPS stimulation.
Comparisons of interest:
490_DMSO_vs_490_IA
1685_DMSO_vs_1685_IA
406_DMSO_vs_406_IA
ALL_DMSO_vs_ALL_IA
 
Contributor(s) Wlodarska M
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date May 12, 2017
Last update date Jul 25, 2021
Contact name Ramnik Xavier
Organization name Massachusetts General Hospital
Department Gastroenterology
Lab Xavier Lab
Street address 55 Fruit Street
City Boston
State/province MA
ZIP/Postal code 02114
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (18)
GSM2620883 490_DMSO_1
GSM2620884 490_DMSO_2
GSM2620886 490_DMSO_3
Relations
BioProject PRJNA386500
SRA SRP107004

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE98884_RAW.tar 2.9 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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