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Series GSE98563 Query DataSets for GSE98563
Status Public on Aug 15, 2017
Title TREM2 is a global regulator of microglia energetic and biosynthetic metabolism during steady state and in Alzheimer’s disease
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The most common form of senile dementia, Alzheimer’s disease (AD), is characterized by Aβ plaques and neurofibrillary tangles in the CNS. AD genetic studies have identified high-risk hypomorphic variants in TREM2, a myeloid cell surface receptor that enables concerted microglial responses to Aβ plaques and neuronal cell death, including proliferation, survival, clustering and phagocytosis. How TREM2 promotes these responses is not known. Here, we demonstrate that TREM2 drives mTOR signaling, which maintains high ATP levels, supports biosynthetic pathways and suppresses AMPK phosphorylation and autophagy. In vitro, TREM2-deficient macrophages undergo dramatically increased autophagy and die in response to growth factor limitation or ER stress. Excessive autophagy is also evident in microglia from Trem2-/- 5XFAD mice and in post-mortem specimens from AD patients carrying TREM2 risk variants. Metabolic derailment, autophagy and cell death can be circumvented by engaging alternative energy production pathways. Thus, restoring microglial energetic and anabolic levels may be a future therapeutic avenue for TREM2-associated neurological disease.
 
Overall design Bone marrow-derived macrophages (BMDMs) from WT and Trem2–/– mice were cultured in either 0.5% or 10% LCCM overnight in complete RPMI. Some samples cells were stimulated with 10 ng/ml LPS for 4 hours.
 
Contributor(s) Ulland TK, Song W, Huang SC, Ulrich JD, Sergushichev A, Beatty WL, Loboda AA, Cairns NJ, Kambal A, Loginicheva E, Gilfillan S, Cella M, Virgin HW, Unanue ER, Wang Y, Artyomov MN, Holtzman DM, Colonna M
Citation(s) 28802038
Submission date May 04, 2017
Last update date May 15, 2019
Contact name Maxim N. Artyomov
E-mail(s) martyomov@pathology.wustl.edu
Organization name Washington University in St.Louis
Department Immunology&Pathology
Street address 660 S. Euclid Avenue, Campus Box 8118
City St.Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (32)
GSM2599731 T2KO_low_MCSF_LPS_rep1
GSM2599732 T2KO_low_MCSF_LPS_rep2
GSM2599733 T2KO_low_MCSF_LPS_rep3
Relations
BioProject PRJNA385524
SRA SRP106492

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE98563_counts.txt.gz 678.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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