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Series GSE98249 Query DataSets for GSE98249
Status Public on Jun 10, 2019
Title Mouse CD11b+ macrophages - Aging of hematopoietic stem cells is driven by regional specialization of marrow macrophages
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The human aged hematopoietic system is prone to dysfunction and clonal selection. Aged hematopoietic stem cells (HSCs) have well-defined characteristics, but the contribution of the bone marrow microenvironment (BMME) to HSC ageing is unclear. We identify age-dependent changes in bone-associated (BA) and marrow-associated (MA) cell populations in murine and human marrow, where only aged MA cells induce aged HSC characteristics. MA aged macrophages (Mφs) could impart aged characteristics to both HSC and BMME populations, and demonstrated decreased ability to engulf senescent neutrophils. Moreover, removal of Mφs from young mice rapidly induced aged HSC characteristics. Interleukin-1β (IL-1β), a cytokine that is restrained when Mφs engulf apoptotic cells, was a key mediator of microenvironmental HSC aging. These data define a previously unknown role for aged MA Mφs to orchestrate BMME and HSC changes. Mφs and IL-1β may therefore represent novel targets for preventing or reversing hematopoietic defects due to advanced age.
 
Overall design mRNA profiles of CD11b+ macrophages from bone marrow and bone associated cells were generated from three individual mice by Illumina HiSeq 2500 sequencing.
 
Contributor(s) Hoffman C, Latchney S, LaMere M, Myers J, Ashton J, Li A, Akwaa F, Rubinova R, McCabe A, Smith J, Liesveld J, Frisch B, Elliott M, MacNamara K, Becker M, Calvi L
Citation(s) 30998506, 33744909
Submission date Apr 26, 2017
Last update date Feb 23, 2022
Contact name Laura Calvi
E-mail(s) Laura_Calvi@URMC.Rochester.edu
Organization name University of Rochester Medical Center
Department Medicine
Lab MC 3-5523
Street address 601 Elmwood Ave
City Rochester
State/province New York
ZIP/Postal code 14642
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (12)
GSM2589843 A1_BAC_CD11b_Hi
GSM2589844 A1_BM_CD11b_Hi
GSM2589845 A2_BAC_CD11b_Hi
This SubSeries is part of SuperSeries:
GSE100907 Aging of hematopoietic stem cells is driven by regional specialization of marrow macrophages
Relations
BioProject PRJNA384393
SRA SRP105282

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE98249_deSeq2_counts.txt.gz 546.6 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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