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Series GSE98198 Query DataSets for GSE98198
Status Public on Sep 10, 2019
Title MYOD Gene Expression Regulation during Myogenic Conversion of Fibroblasts
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary We provide here gene expression profile of IMR90 fibroblasts expressing or not MYOD culured in GM for 1 day or GM for 1 day and DM for 3 days
 
Overall design Integration of RNASeq and ChIPSeq
 
Contributor(s) Dall'Agnese A, Puri PL
Citation(s) 31519520
Submission date Apr 25, 2017
Last update date Jul 25, 2021
Contact name Alessandra Dall'Agnese
E-mail(s) aled@wi.mit.edu
Organization name Whitehead Institute
Street address 455 Main Street
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (8)
GSM2589108 IMR90_RNA_Seq_EMPTY_GM_Rep1
GSM2589109 IMR90_RNA_Seq_MYOD_GM_Rep1
GSM2589110 IMR90_RNA_Seq_EMPTY_DM_Rep1
This SubSeries is part of SuperSeries:
GSE98530 Re-Wiring 3D Nuclear Architecture by a Single Transcription Factor during Somatic Cell Reprogramming
Relations
BioProject PRJNA384386
SRA SRP105281

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE98198_IMR90_MYOD_DM_vs_MYOD_GM.csv.gz 980.8 Kb (ftp)(http) CSV
GSE98198_RAW.tar 805.3 Mb (http)(custom) TAR (of BW, CSV, TXT)
GSE98198_diff_M_GM_vs_M_DM_c3.0_common.bed.gz 415.5 Kb (ftp)(http) BED
GSE98198_file_readme.txt 2.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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