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| Status |
Public on Jan 10, 2019 |
| Title |
Genome-Wide DNA Methylation Profiling of Gastric Cancer-Associated Myofibroblasts |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by array
|
| Summary |
The Illumina Infinium HumanMethylation450 BeadChip arrays were performed on a collection of primary gastric cancer-associated myofibroblasts (CAM) and their patient-matched adjacent tissue myofibroblasts (ATM) as well as unrelated normal tissue myofibroblasts (NTM). CAM and ATM samples were obtained from patients undergoing gastric cancer surgery; whereas NTM samples were generated from deceased transplant donors with normal morphology.
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| |
|
| Overall design |
Bisulphite converted DNA from the 9 samples, including 3 CAMs, 3 ATMs and 3 NTMs, were hybridised to the Illumina Infinium HumanMethylation450 BeadChip
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| |
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| Contributor(s) |
Najgebauer H, Sanderson C |
| Citation(s) |
30624614 |
| |
| Submission date |
Apr 12, 2017 |
| Last update date |
Mar 22, 2019 |
| Contact name |
Hanna Najgebauer |
| E-mail(s) |
hanna.najgebauer@gmail.com
|
| Organization name |
University of Liverpool
|
| Department |
Cellular and Molecular Physiology
|
| Street address |
Crown Street
|
| City |
Liverpool |
| ZIP/Postal code |
L69 3BX |
| Country |
United Kingdom |
| |
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| Platforms (1) |
| GPL13534 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) |
|
| Samples (9)
|
| GSM2575446 |
genomic DNA from myofibroblasts CAM1 derived from gastric tumour C1N |
| GSM2575447 |
genomic DNA from myofibroblasts ATM1 derived from patient-matched adjacent tissue A1N |
| GSM2575448 |
genomic DNA from myofibroblasts CAM2 derived from gastric tumour C2N |
| GSM2575449 |
genomic DNA from myofibroblasts ATM2 derived from patient-matched adjacent tissue A2N |
| GSM2575450 |
genomic DNA from myofibroblasts CAM3 derived from gastric tumour C3N |
| GSM2575451 |
genomic DNA from myofibroblasts ATM3 derived from patient-matched adjacent tissue A3N |
| GSM2575452 |
genomic DNA from gastric myofibroblasts NTM1 derived from organ donors N1N |
| GSM2575453 |
genomic DNA from gastric myofibroblasts NTM2 derived from organ donors N2N |
| GSM2575454 |
genomic DNA from gastric myofibroblasts NTM3 derived from organ donors N3N |
|
| Relations |
| BioProject |
PRJNA382669 |
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