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Series GSE97568 Query DataSets for GSE97568
Status Public on Jan 02, 2019
Title Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the mouse brain
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary The study provides new insights into how 5mC/5hmC vary across different part of brain, and the association and distinct roles of 5mC/5hmC in regulating tissue identity and specification.
Overall design Examination of hydroxymethylomes of mouse cortex, olfactory bulb and cerebellum tissues,as well as methylomes and allele-specific transcriptomes of the same tissues
Contributor(s) Ma Q
Citation(s) 30594220
Submission date Apr 10, 2017
Last update date May 15, 2019
Contact name Qin Ma
Organization name Beijing Institute of Genomics
Department Chinese Academy of Sciences
Street address NO.1 Beichen West Road, Chaoyang District
City Beijing
ZIP/Postal code 100101
Country China
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (22)
GSM2572242 cortex oxBS-seq rep1
GSM2572243 cortex oxBS-seq rep2
GSM2572244 cortex oxBS-seq rep3
BioProject PRJNA382333
SRA SRP103763

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97568_RAW.tar 6.5 Mb (http)(custom) TAR (of FPKM_TRACKING, TXT) 95.3 Mb (ftp)(http) BW 103.8 Mb (ftp)(http) BW 105.2 Mb (ftp)(http) BW 102.4 Mb (ftp)(http) BW 100.5 Mb (ftp)(http) BW 110.3 Mb (ftp)(http) BW
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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