|
| Status |
Public on Nov 07, 2017 |
| Title |
ATAC sequencing of developing cone photoreceptors |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We determined the accessible genome of postmitotic cone photoreceptors in the central region of the mouse retina on postnatal days P3, P6, and P10. At eachtimepoint we isolated GFP-labeled cells from three different Chrnb4-GFP mice (biological triplicates) using fluorescence-activated cell sorting. We then acquired reads of regions of accessible DNA of the sorted cones using ATAC sequencing. Our data set contained 9 samples.
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| |
|
| Overall design |
ATAC-seq of isolated cone photoreceptors at 3 timepoints
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| |
|
| Contributor(s) |
Daum JM, Holwerda S, Keles Ö, Kohler H, Stadler MB, Roska B |
| Citation(s) |
29106373 |
| |
| Submission date |
Apr 07, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Botond Roska |
| E-mail(s) |
roska-geo@fmi.ch
|
| Organization name |
FMI
|
| Street address |
Maulbeerstrasse 66
|
| City |
Basel |
| ZIP/Postal code |
4058 |
| Country |
Switzerland |
| |
|
| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
|
| Samples (9)
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| This SubSeries is part of SuperSeries: |
| GSE97536 |
RNA sequencing and ATAC sequencing of developing cone photoreceptors |
|
| Relations |
| BioProject |
PRJNA382181 |
| SRA |
SRP103748 |
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