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Series GSE97139 Query DataSets for GSE97139
Status Public on Apr 01, 2019
Title The role of IFN-I and IL-27 in the expansion of virus-specific CD8+ T cell subtypes during persistent infection
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Chronic infection and cancer are associated with suppressed T cell responses in the presence of activating antigen. Recent work identified memory-like CD8+ T cells termed follicular cytotoxic T cells (TFC) which sustain T cell responses during persistent infection and are essential for the T-cell proliferative burst following PD1 blockade. Approaches to expand these cells are sought. We show that blockade of interferon type 1 (IFN-I) receptor leads to TFC expansion in an IL-27-and STAT1-dependent manner. IFNAR1 blockade promoted accelerated cell division and retention of TCF1 in virus-specific CD8+ T cells. We found that CD8+ T cell-intrinsic IL-27 signaling safeguards the ability of TCF1-high cells to sustain proliferation and prevents premature cell cycle exit and programmed cell death. Transcriptome analysis revealed an IL-27-regulated gene module controlling survival of activated CD8+ T cells which is enhanced in IFNAR-attenuated conditions. We further demonstrated a cell-intrinsic requirement for the IL-27 target IRF1 in TFC expansion through promoting sustained division. These findings reveal that IL-27 opposes IFN-I to uncouple cell division from effector differentiation, and suggest IL-27 signaling could be exploited to augment self-renewing T cell populations in patients with chronic infections.
 
Overall design Cells were isolated from mouse spleens, sorted using flow cytometry and RNA isolated for sequencing. 3 replicates per biological group were used, each sample represents cells from an individual mouse.
 
Contributor(s) Zak J, Huang Z, Teijaro JR, Pratumchai I
Citation(s) 31164392
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 AI118862 IL-27 elicited antibodies: A novel means to control persistent Arenavirus infection THE SCRIPPS RESEARCH INSTITUTE John Ross Teijaro
R01 AI123210 Novel Strategies for Controlling Persistent Viral Infection THE SCRIPPS RESEARCH INSTITUTE John Ross Teijaro
R21 AI143529 Novel Regulators of B Cell Tolerance THE SCRIPPS RESEARCH INSTITUTE Changchun Xiao
Submission date Mar 28, 2017
Last update date Jul 02, 2019
Contact name John R Teijaro
E-mail(s) teijaro@scripps.edu
Organization name The Scripps Research Institute
Department Immunology and Microbial Science
Street address 10550 North Torrey Pines Rd
City San Diego
State/province CA
ZIP/Postal code 92037
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (47)
GSM2552183 P14 naive 1
GSM2552184 P14 naive 2
GSM2552185 P14 Iso 1
Relations
BioProject PRJNA380798
SRA SRP102615

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97139_raw_counts.txt.gz 1.6 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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