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Series GSE96839 Query DataSets for GSE96839
Status Public on Mar 21, 2019
Title Peripheral and systemic antigens elicit an expandable pool of resident memory CD8+ T cells in the bone marrow
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Bone marrow (BM) has been put forward as a major reservoir for memory CD8+ T cells. In order to fulfill that function, BM should "store" memory CD8+ T cells, which in biological terms would require these "stored" memory cells to be in disequilibrium with the circulatory pool. This issue is a matter of ongoing debate. Here, we unequivocally demonstrate that murine and human BM harbors a population of tissue-resident memory CD8+ T (TRM ) cells. These cells develop against various pathogens, independently of BM infection or local antigen recognition. BM CD8+ TRM cells share a transcriptional program with resident lymphoid cells in other tissues; they are poly-functional cytokine producers and dependent on IL-15, Blimp-1 and Hobit. CD8+ TRM cells reside in the BM parenchyma, but are in close contact with the circulation. Moreover, this pool of resident T cells is not size-restricted and expands upon peripheral antigenic re-challenge. This works extends the role of the BM in the maintenance of CD8+ T cell memory to include the preservation of an expandable reservoir of functional, non-recirculating memory CD8+ T cells, which develop in response to a large variety of peripheral antigens. This article is protected by copyright. All rights reserved.
 
Overall design In total 3 sorts were done, and for each sort the 8 T cell populations were isolated from a pool of 6 mice. The quality of the RNA sample of RM T cells of sort 4 was poor and therefore removed from analysis.
 
Contributor(s) Pascutti MF, Geerman S, Nota B, Nolte MA
Citation(s) 30891737
Submission date Mar 21, 2017
Last update date May 15, 2019
Contact name Benjamin Nota
E-mail(s) benjamin.nota@gmail.com
Phone +31 (0)20-5123787
Organization name Sanquin
Department Research Facilities
Street address Plesmanlaan 125
City Amsterdam
State/province Noord Holland
ZIP/Postal code 1066 CX
Country Netherlands
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (23)
GSM2544888 Sp.EM.4
GSM2544889 Sp.RM.4
GSM2544890 Sp.CM.4
Relations
BioProject PRJNA379908
SRA SRP102214

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Supplementary file Size Download File type/resource
GSE96839_GEO.counts.txt.gz 854.6 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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