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Series GSE96793 Query DataSets for GSE96793
Status Public on Mar 19, 2017
Title Protein disulfide isomerase inhibition synergistically enhances the efficacy of sorafenib for hepatocellular carcinoma [HepG2]
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Sorafenib is the only approved targeted drug for hepatocellular carcinoma (HCC), but its effect on patients’ survival gain is limited and varies over a wide range depending on patho-genetic conditions. Thus, enhancing the efficacy of sorafenib and finding a reliable predictive biomarker are crucuial to achieve efficient control of HCCs. In this study, we employed a systems approach by combining transcriptome analysis of the mRNA changes in HCC cell lines in response to sorafenib with network analysis to investigate the action and resistance mechanism of sorafenib. Gene ontology and gene set analysis revealed that proteotoxic stress and apoptosis modules are activated in the presence of sorafenib. Further analysis of the endoplasmic reticulum (ER) stress network model combined with in vitro experiments showed that introducing an additional stress by treating the orally active protein disulfide isomerase (PDI) inhibitor (PACMA 31) can synergistically increase the efficacy of sorafenib in vitro and in vivo, which was confirmed using a mouse xenograft model. We also found that HCC patients with high PDI expression show resistance to sorafenib and poor clinical outcomes, compared to the low PDI expression group. These results suggest that PDI is a promising therapeutic target for enhancing the efficacy of sorafenib and can also be a biomarker for predicting sorafenib responsiveness.
 
Overall design Total RNA was extracted from cultured cells and subjected to RT-PCR analysis. HCC cell lines (SNU761, Huh7, Hep3B and HepG2) were treated with sorafenib 3 mM for 24 hours, while the control group was treated with only DMSO.
 
Contributor(s) Won J, Yu SJ, Hwang CY, Yoon J, Cho K
Citation(s) 28439950
Submission date Mar 18, 2017
Last update date Aug 13, 2018
Contact name Jae-Kyung Won
E-mail(s) jkwon@snuh.org
Organization name Seoul National University Hospital
Street address 101 Daehak-ro
City Seoul
ZIP/Postal code 110-744
Country South Korea
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (6)
GSM2544155 HepG2_control_rep1
GSM2544156 HepG2_control_rep2
GSM2544157 HepG2_control_rep3
This SubSeries is part of SuperSeries:
GSE96796 Protein disulfide isomerase inhibition synergistically enhances the efficacy of sorafenib for hepatocellular carcinoma
Relations
BioProject PRJNA379714

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE96793_Non-normalized_data_HepG2_control.txt.gz 1.1 Mb (ftp)(http) TXT
GSE96793_Non-normalized_data_HepG2_sorafenib.txt.gz 1.0 Mb (ftp)(http) TXT
GSE96793_RAW.tar 26.2 Mb (http)(custom) TAR
Processed data included within Sample table

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