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Series GSE96096 Query DataSets for GSE96096
Status Public on Mar 11, 2017
Title Neuroserpin polymers cause oxidative stress in a neuronal model of the dementia FENIB
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The serpinopathies are human pathologies caused by mutations that promote polymerisation and intracellular deposition of proteins of the serpin superfamily, leading to a poorly understood cell toxicity. The dementia familial encephalopathy with neuroserpin inclusion bodies (FENIB) is caused by polymerisation of the neuronal serpin neuroserpin (NS) within the endoplasmic reticulum (ER) of neurons. We have generated transgenic neural progenitor cell (NPC) cultures from mouse embryonic cerebral cortex, stably expressing the control protein GFP (green fluorescent protein), or human wild type, G392E or deltaNS. We have characterised these cells in the proliferative state and after differentiation to neurons. Our results show that G392E NS formed polymers that were mostly retained within the ER, while wild type NS was correctly secreted as a monomeric protein into the culture medium. DeltaNS was absent at steady state due to its rapid degradation, but it was easily detected upon proteasomal block. Looking at their intracellular distribution, wild type NS was found in partial co-localisation with ER and Golgi markers, while G392E NS was localised within the ER only. Furthermore, polymers of NS were detected by ELISA and immunofluorescence in neurons expressing the mutant but not the wild type protein. We used our model system to investigate which cellular pathways were activated by intracellular polymers of G392E NS by performing RNA sequencing of differentiated cells expressing G392E NS or the negative control protein GFP, and identified 747 genes with a significant upregulation (623) or downregulation (124) in G392E NS-expressing cells. We focused our attention on genes involved in the defence against oxidative stress that were up-regulated in cells expressing G392E NS. Inhibition of these defences by specific pharmacological reagents uncovered the damaging effects of NS polymers. Our results support a role for oxidative stress in the cellular toxicity underlying the neurodegenerative dementia FENIB.
 
Overall design mRNA profiles of neural progenitor cells stably overexpressing GFP or G392E neuroserpin were generated by deep sequencing, in triplicate, using Illumina HiSeq2000.
 
Contributor(s) Guadagno NA, Moriconi C, Licursi V, D'Acunto E, Nisi P, Cacci E, Negri R, De Jaco A, Lupo G, Miranda E
Citation(s) 28363799
Submission date Mar 10, 2017
Last update date May 15, 2019
Contact name Valerio Licursi
E-mail(s) valerio.licursi@uniroma1.it
Organization name Institute of Molecular Biology and Pathology (IBPM), National Research Council (CNR)
Department c/o Dept. Biology and Biotechnologies "C. Darwin", Sapienza University of Rome
Street address via degli Apuli, 4
City Rome
ZIP/Postal code 00185
Country Italy
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (6)
GSM2533290 GFP_rep1
GSM2533291 GFP_rep2
GSM2533292 GFP_rep3
Relations
BioProject PRJNA378796
SRA SRP101736

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Supplementary file Size Download File type/resource
GSE96096_RawCountsMatrix.txt.gz 309.7 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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