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GEO accession:
Series GSE95256
Query DataSets for GSE95256
Status
Public on Apr 19, 2017
Title
Genomic responses of mouse synovial fibroblasts during TNF-driven arthritogenesis greatly mimic those of human rheumatoid arthritis
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28409894
Submission date
Feb 23, 2017
Last update date
May 15, 2019
Contact name
George Kollias
E-mail(s)
kollias@fleming.gr
Organization name
BSRC "Alexander Fleming"/National and Kapodistrian University of Athens
Department
Institute of Immunology/Department of Physiology, School of Medicine
Street address
34 Fleming Street
City
Vari
ZIP/Postal code
16672
Country
Greece
Platforms (1)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
Samples (64)
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GSM2500859
WT 3weeks RNA-Seq replicate 1
GSM2500860
WT 3weeks RNA-Seq replicate 2
GSM2500861
WT 3weeks RNA-Seq replicate 3
GSM2500862
Tg197 3weeks RNA-Seq replicate 1
GSM2500863
Tg197 3weeks RNA-Seq replicate 2
GSM2500864
Tg197 3weeks RNA-Seq replicate 3
GSM2500865
WT 8weeks RNA-Seq replicate 1
GSM2500866
WT 8weeks RNA-Seq replicate 2
GSM2500867
WT 8weeks RNA-Seq replicate 3
GSM2500868
Tg197 8weeks RNA-Seq replicate 1
GSM2500869
Tg197 8weeks RNA-Seq replicate 2
GSM2500870
Tg197 8weeks RNA-Seq replicate 3
GSM2500871
WT 8weeks plus TNF RNA-Seq replicate 1
GSM2500872
WT 8weeks plus TNF RNA-Seq replicate 2
GSM2500873
WT 8weeks plus TNF RNA-Seq replicate 3
GSM2500874
WT 11weeks RNA-Seq replicate 1
GSM2500875
WT 11weeks RNA-Seq replicate 2
GSM2500876
WT 11weeks RNA-Seq replicate 3
GSM2500877
Tg197 11weeks RNA-Seq replicate 1
GSM2500878
Tg197 11weeks RNA-Seq replicate 2
GSM2500879
Tg197 11weeks RNA-Seq replicate 3
GSM2500880
WT 3weeks MethylCap-Seq replicate 1
GSM2500881
WT 3weeks MethylCap-Seq replicate 2
GSM2500882
WT 3weeks MethylCap-Seq replicate 3
GSM2500883
Tg197 3weeks MethylCap-Seq replicate 1
GSM2500884
Tg197 3weeks MethylCap-Seq replicate 2
GSM2500885
Tg197 3weeks MethylCap-Seq replicate 3
GSM2500886
WT 8weeks MethylCap-Seq replicate 1
GSM2500887
WT 8weeks MethylCap-Seq replicate 2
GSM2500888
WT 8weeks MethylCap-Seq replicate 3
GSM2500889
Tg197 8weeks MethylCap-Seq replicate 1
GSM2500890
Tg197 8weeks MethylCap-Seq replicate 2
GSM2500891
Tg197 8weeks MethylCap-Seq replicate 3
GSM2500892
WT 8weeks plus TNF MethylCap-Seq replicate 1
GSM2500893
WT 8weeks plus TNF MethylCap-Seq replicate 2
GSM2500894
WT 8weeks plus TNF MethylCap-Seq replicate 3
GSM2500895
WT 11weeks MethylCap-Seq replicate 1
GSM2500896
WT 11weeks MethylCap-Seq replicate 2
GSM2500897
WT 11weeks MethylCap-Seq replicate 3
GSM2500898
Tg197 11weeks MethylCap-Seq replicate 1
GSM2500899
Tg197 11weeks MethylCap-Seq replicate 2
GSM2500900
Tg197 11weeks MethylCap-Seq replicate 3
GSM2500915
WT 3weeks H3K4me3-Seq replicate 1
GSM2500916
WT 3weeks H3K4me3-Seq replicate 2
GSM2500917
WT 3weeks H3K4me3-Seq replicate 3
GSM2500918
Tg197 3weeks H3K4me3-Seq replicate 1
GSM2500919
Tg197 3weeks H3K4me3-Seq replicate 2
GSM2500920
Tg197 3weeks H3K4me3-Seq replicate 3
GSM2500921
WT 8weeks H3K4me3-Seq replicate 1
GSM2500922
WT 8weeks H3K4me3-Seq replicate 2
GSM2500923
WT 8weeks H3K4me3-Seq replicate 3
GSM2500924
Tg197 8weeks H3K4me3-Seq replicate 1
GSM2500925
Tg197 8weeks H3K4me3-Seq replicate 2
GSM2500926
Tg197 8weeks H3K4me3-Seq replicate 3
GSM2500927
WT 8weeks plus TNF H3K4me3-Seq replicate 1
GSM2500928
WT 8weeks plus TNF H3K4me3-Seq replicate 2
GSM2500929
WT 8weeks plus TNF H3K4me3-Seq replicate 3
GSM2500930
WT 11weeks H3K4me3-Seq replicate 1
GSM2500931
WT 11weeks H3K4me3-Seq replicate 2
GSM2500932
WT 11weeks H3K4me3-Seq replicate 3
GSM2500933
Tg197 11weeks H3K4me3-Seq replicate 1
GSM2500934
Tg197 11weeks H3K4me3-Seq replicate 2
GSM2500935
Tg197 11weeks H3K4me3-Seq replicate 3
GSM2500936
H3K4me3 Input
This SuperSeries is composed of the following SubSeries:
GSE95251
Genomic responses of mouse synovial fibroblasts during TNF-driven arthritogenesis greatly mimic those of human rheumatoid arthritis (RNA-Seq).
GSE95252
Genomic responses of mouse synovial fibroblasts during TNF-driven arthritogenesis greatly mimic those of human rheumatoid arthritis (MethylCap-Seq).
GSE95254
Genomic responses of mouse synovial fibroblasts during TNF-driven arthritogenesis greatly mimic those of human rheumatoid arthritis (H3K4me3-Seq).
Relations
BioProject
PRJNA376508
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Format
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Supplementary data files not provided
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