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| Status |
Public on Mar 09, 2018 |
| Title |
RNAseq of quiescent (Q) and stress induced premature senescent (SIPS) fibroblasts treated with plant extract (1201) from Solidago vigaurea subspecies alpestris |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Quiescent (Q) and stress induced premature senescent (SIPS) fibroblasts were treated for the duration of 4 days with growth medium supplemented with a plant extract (1201) from Solidago vigaurea subspecies alpestris. Rna was isolated with Trizol and sent to GATC for next generation sequencing with Ilumina technology. The plant extract proofed to block the negative effects of senescence in human skin fibroblasts in various experiments by delaying the acquisition of a senescent phenotype/favouring a papillary-like phenotype and attenuating the senescence associated secretory phenotype. The RNAseq was performed to understand the underlying molecular mechanism of the observed effects. SIPS was induced by chronic oxidative stress treatment (9 days with 1 h 100 µM H2O2 per day).
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| Overall design |
12 samples in total. Quiescent cells (Q), quiescent cells treated with 1201 for 4 days (Q1201), stress induced premature senescent cells (SIPS) and stress induced premature senescent cells treated with 1201 for 4 days (SIPS1201), all conditions in triplicates. Quiescent cells are considered the appropiate control for senescent cells.
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| Contributor(s) |
Laemmermann I, Schosserer M |
| Citation(s) |
29675264 |
| |
| Submission date |
Jan 12, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Markus Schosserer |
| E-mail(s) |
markus.schosserer@meduniwien.ac.at
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| Organization name |
Medical University of Vienna
|
| Department |
Center for Pathobiochemistry and Genetics
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| Lab |
Markus Schosserer
|
| Street address |
Waehringer Strasse 10
|
| City |
Vienna |
| ZIP/Postal code |
1090 |
| Country |
Austria |
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| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA361062 |
| SRA |
SRP096629 |
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