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Series GSE92488 Query DataSets for GSE92488
Status Public on Jan 31, 2019
Title Systems analysis of hepatic insulin resistance identifies RGS4 as a key mediator of metabolic adaptation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We profiled the transcriptomes of chow diet-fed and high-fat diet-fed mice across insulin stimulation time points. We also profiled the effects of metformin treatment on mouse liver transcritomes. Our temporal analyses of chow-diet and 16 week high-fat diet transcriptomics following insulin stimulation uncovered several regulator of G-protein signaling genes, particularly Rgs4, that are specifically regulated transcriptionally in HFD livers following insulin stimulation. We validated these findings with additional assays of RGS4 mRNA and protein levels and characterized this molecule's role in regulating hepatic insulin responses in mice.
 
Overall design Liver mRNA was profiled by sequencing from chow diet and 6 week and 16 week high-fat diet mouse livers. We sampled time points following insulin stimulation as well as following treatment with metformin. At least three mice per group/time point were used for statistical analyses.
 
Contributor(s) Soltis AR, Kennedy NJ
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Submission date Dec 16, 2016
Last update date May 15, 2019
Contact name Anthony Robert Soltis
E-mail(s) anthony.soltis.ctr@usuhs.edu
Organization name Uniformed Services University
Department Anatomy, Physiology and Genetics
Lab Bioinformatics Core
Street address 4301 Jones Bridge Road
City Bethesda
State/province MD
ZIP/Postal code 20814
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (45)
GSM2430609 mRNAseq_CD_15m_Ins_replicate1
GSM2430610 mRNAseq_CD_15m_Ins_replicate2
GSM2430611 mRNAseq_CD_15m_Ins_replicate3
Relations
BioProject PRJNA357684
SRA SRP095239

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE92488_mRNA_16wkHFD_0_Ins_metformin_allReps_gene_raw_read_counts.txt.gz 151.1 Kb (ftp)(http) TXT
GSE92488_mRNA_16wkHFD_allTimes_allReps_gene_CQN_DESeq2_normalized_read_counts.txt.gz 2.2 Mb (ftp)(http) TXT
GSE92488_mRNA_16wkHFD_allTimes_allReps_gene_raw_read_counts.txt.gz 542.5 Kb (ftp)(http) TXT
GSE92488_mRNA_6wkHFD_0_Ins_allReps_gene_raw_read_counts.txt.gz 163.2 Kb (ftp)(http) TXT
GSE92488_mRNA_6wkHFD_0_Ins_metformin_allReps_gene_raw_read_counts.txt.gz 151.3 Kb (ftp)(http) TXT
GSE92488_mRNA_CD_0_Ins_metformin_allReps_gene_raw_read_counts.txt.gz 151.1 Kb (ftp)(http) TXT
GSE92488_mRNA_CD_allTimes_allReps_gene_CQN_DESeq2_normalized_read_counts.txt.gz 1.8 Mb (ftp)(http) TXT
GSE92488_mRNA_CD_allTimes_allReps_gene_raw_read_counts.txt.gz 464.5 Kb (ftp)(http) TXT
GSE92488_refFlat-mm9-2012-01-25.gtf.gz 4.3 Mb (ftp)(http) GTF
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