GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Series GSE90240

Query DataSets for GSE90240

Status

Public on Dec 07, 2016

Title

total RNA-seq from K562 (ENCSR000CQA)

Project

ENCODE

Organism

Homo sapiens

Experiment type

Expression profiling by high throughput sequencing

Summary

The libraries contained in this experiment come from the nucleoplasm fraction of independent growths of cell line K562. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR000CQA/

Citation(s)

22955616

BioProject

PRJNA30709

Submission date

Nov 22, 2016

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL10999

Illumina Genome Analyzer IIx (Homo sapiens)

Samples (2)

GSM2400180	total RNA-seq from K562 (ENCLB555AMM)
GSM2400181	total RNA-seq from K562 (ENCLB555AML)

Relations

Supersedes

GSM765390

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE90240_ENCFF000HKY_contigs_hg19.bigBed	17.6 Mb	(ftp)(http)	BIGBED
GSE90240_ENCFF000HKZ_exon_quantifications_hg19.gtf.gz	9.6 Mb	(ftp)(http)	GTF
GSE90240_ENCFF000HLB_exon_quantifications_hg19.gtf.gz	17.7 Mb	(ftp)(http)	GTF
GSE90240_ENCFF000HLG_gene_quantifications_hg19.gtf.gz	5.5 Mb	(ftp)(http)	GTF
GSE90240_ENCFF000HLI_gene_quantifications_hg19.gtf.gz	6.5 Mb	(ftp)(http)	GTF
GSE90240_ENCFF000HLK_gene_quantifications_hg19.gtf.gz	2.0 Mb	(ftp)(http)	GTF
GSE90240_ENCFF000HLM_splice_junctions_hg19.bigBed	9.7 Mb	(ftp)(http)	BIGBED
GSE90240_ENCFF000HLY_transcript_quantifications_hg19.gtf.gz	7.1 Mb	(ftp)(http)	GTF
GSE90240_ENCFF000HLZ_transcript_quantifications_hg19.gtf.gz	29.0 Mb	(ftp)(http)	GTF
GSE90240_ENCFF000HMC_transcript_quantifications_hg19.gtf.gz	4.7 Mb	(ftp)(http)	GTF
GSE90240_ENCFF044NVY_contigs_hg19.bed.gz	11.8 Mb	(ftp)(http)	BED
GSE90240_ENCFF187LMU_splice_junctions_hg19.bed.gz	9.1 Mb	(ftp)(http)	BED
GSE90240_RAW.tar	7.1 Gb	(http)(custom)	TAR (of BIGWIG, TSV, TXT)
SRA Run Selector
Raw data provided as supplementary file
Processed data are available on Series record
Processed data provided as supplementary file