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Series GSE89757 Query DataSets for GSE89757
Status Public on Dec 15, 2016
Title Integrative analysis of disease signatures shows inflammation disrupts juvenile experience-dependent cortical plasticity
Organism Mus musculus
Experiment type Expression profiling by array
Summary Throughout childhood and adolescence, periods of heightened neuroplasticity are critical for the development of healthy brain function and behavior. Given the high prevalence of neurodevelopmental disorders such as autism, identifying disruptors of developmental plasticity represents an essential step for developing strategies for prevention and intervention. Applying a novel computational approach that systematically assessed connections between 436 transcriptional signatures of disease and multiple signatures of neuroplasticity, we identified inflammation as a common pathological process central to a diverse set of diseases predicted to dysregulate plasticity signatures. We tested the hypothesis that inflammation disrupts developmental cortical plasticity in vivo using the mouse ocular dominance model of experience-dependent plasticity in primary visual cortex. We found administration of systemic lipopolysaccharide suppressed plasticity during juvenile critical period with accompanying transcriptional changes in a particular set of molecular regulators within primary visual cortex. These findings suggest inflammation may have unrecognized adverse consequences on the postnatal developmental trajectory and indicates that treating inflammation may reduce the burden of neurodevelopmental disorders.
 
Overall design Comparative RNA expression profiles from juvenile wild-type, adult Lynx1-KO, and adult wild-type bilateral primary visual cortex (n=3 biological replicates per group)
 
Contributor(s) Smith MR, Burman P, Sadahiro M, Kidd BA, Dudley JT, Morishita H
Citation(s) 28101530
NIH grant(s)
Grant ID Grant title Affiliation Name
T32 HD075735 Interdisciplinary Training in Systems and Developmental Biology and Birth Defects MOUNT SINAI SCHOOL OF MEDICINE Ethylin Wang Jabs
P30 ES023515 The Mount Sinai Transdisciplinary Center on Early Environmental Exposures MOUNT SINAI SCHOOL OF MEDICINE ROBERT O WRIGHT
R01 EY024918 Regulation of adult visual cortex plasticity by endogenous nicotinic modulators MOUNT SINAI SCHOOL OF MEDICINE Morishita
R01 EY026053 Proteolytic Regulation of Inhibitory Circuits to Gate Cortical Plasticity MOUNT SINAI SCHOOL OF MEDICINE Morishita
R21 MH106919 Mechanisms regulating developmental critical period for establishing attention MOUNT SINAI SCHOOL OF MEDICINE Morishita
R01 DK098242 Methods for Evolutionary Informed Network Analysis to Discover Disease Variation MOUNT SINAI SCHOOL OF MEDICINE Joel Thomas Dudley
U54 CA189201 Mount Sinai's Knowledge Management Center for Illuminating the Druggable Genome MOUNT SINAI SCHOOL OF MEDICINE Joel Thomas Dudley, Ma'ayan
Submission date Nov 10, 2016
Last update date Jan 16, 2019
Contact name Milo Robert Smith
Organization name Icahn School of Medicine at Mount Sinai
Department Neuroscience
Lab Hirofumi Morishita Laboratory
Street address 1 Gustave L Levy Place
City New York
State/province NY
ZIP/Postal code 10024
Country USA
 
Platforms (1)
GPL6887 Illumina MouseWG-6 v2.0 expression beadchip
Samples (9)
GSM2388105 primary_visual_cortex-wt-juvenile-1
GSM2388106 primary_visual_cortex-wt-juvenile-2
GSM2388107 primary_visual_cortex-wt-juvenile-3
Relations
BioProject PRJNA353100

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE89757_RAW.tar 15.8 Mb (http)(custom) TAR
GSE89757_README.txt 1.3 Kb (ftp)(http) TXT
GSE89757_controlProbeProfile_smithmr2016.txt.gz 76.7 Kb (ftp)(http) TXT
GSE89757_non-normalized.txt.gz 1.6 Mb (ftp)(http) TXT
GSE89757_preprocessed_microarray.txt.gz 1.3 Mb (ftp)(http) TXT
GSE89757_probeProfile_smithmr2016.txt.gz 11.9 Mb (ftp)(http) TXT
GSE89757_sampleData_smithmr2016.txt.gz 279 b (ftp)(http) TXT
Processed data are available on Series record

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