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Series GSE88817 Query DataSets for GSE88817
Status Public on Aug 24, 2017
Title In situ CAPTURE of chromatin interactions by biotinylated dCas9
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 28841410
Submission date Oct 17, 2016
Last update date Jul 25, 2021
Contact name Jian Xu
E-mail(s) Jian.Xu@stjude.org
Phone 9015955208
Organization name St. Jude Children's Research Hospital
Department Pathology
Street address 262 Danny Thomas Place, MS 345
City Memphis
State/province Tennessee
ZIP/Postal code 38105
Country USA
 
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (175)
GSM2635065 CAPTURE-3C-seq_K562_sgHS1-rep1
GSM2635066 CAPTURE-3C-seq_K562_sgHS1-rep2
GSM2635067 CAPTURE-3C-seq_K562_sgHS1-combined
This SuperSeries is composed of the following SubSeries:
GSE99173 ATAC-seq analysis in K562 cells with or without HBD-1k region knockout, mouse KH2 embryonic stem cells (ESCs) and differentiated KH2 Embryoid bodies (EBs)
GSE99174 CAPTURE-3C-seq analysis of cis-element-mediated long-range DNA interactions
GSE99177 ChIP-seq analysis of dCas9 chromatin occupancy by dCas9/sgRNA-mediated CAPTURE
Relations
BioProject PRJNA348725

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE88817_RAW.tar 12.3 Gb (http)(custom) TAR (of BED, WIG)
SRA Run SelectorHelp
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