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GEO accession:
Series GSE87822
Query DataSets for GSE87822
Status
Public on Mar 13, 2017
Title
The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28287392
Submission date
Oct 11, 2016
Last update date
May 15, 2019
Contact name
Hamish W King
Organization name
Queen Mary University of London
Department
Blizard Institute
Street address
4 Newark St
City
London
ZIP/Postal code
E1 2AT
Country
United Kingdom
Platforms (1)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (81)
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GSM2341271
ZHBTC4_ATAC_UNT_rep1 (ATAC-Seq)
GSM2341272
ZHBTC4_ATAC_UNT_rep2 (ATAC-Seq)
GSM2341273
ZHBTC4_ATAC_UNT_rep3 (ATAC-Seq)
GSM2341274
ZHBTC4_ATAC_24hDOX_rep1 (ATAC-Seq)
GSM2341275
ZHBTC4_ATAC_24hDOX_rep2 (ATAC-Seq)
GSM2341276
ZHBTC4_ATAC_24hDOX_rep3 (ATAC-Seq)
GSM2341277
BRG1fl_ATAC_UNT_rep1 (ATAC-Seq)
GSM2341278
BRG1fl_ATAC_UNT_rep2 (ATAC-Seq)
GSM2341279
BRG1fl_ATAC_UNT_rep3 (ATAC-Seq)
GSM2341280
BRG1fl_ATAC_72hTAM_rep1 (ATAC-Seq)
GSM2341281
BRG1fl_ATAC_72hTAM_rep2 (ATAC-Seq)
GSM2341282
BRG1fl_ATAC_72hTAM_rep3 (ATAC-Seq)
GSM2341283
E14_Tn5Control (ATAC-Seq)
GSM2341284
ZHBTC4_OCT4_UNT_rep1 (ChIP-Seq)
GSM2341285
ZHBTC4_OCT4_UNT_rep2 (ChIP-Seq)
GSM2341286
ZHBTC4_OCT4_UNT_rep3 (ChIP-Seq)
GSM2341287
ZHBTC4_OCT4_24hDOX_rep1 (ChIP-Seq)
GSM2341288
ZHBTC4_OCT4_24hDOX_rep2 (ChIP-Seq)
GSM2341289
ZHBTC4_OCT4_24hDOX_rep3 (ChIP-Seq)
GSM2341290
ZHBTC4_SOX2_UNT_rep1 (ChIP-Seq)
GSM2341291
ZHBTC4_SOX2_UNT_rep2 (ChIP-Seq)
GSM2341292
ZHBTC4_SOX2_UNT_rep3 (ChIP-Seq)
GSM2341293
ZHBTC4_SOX2_24hDOX_rep1 (ChIP-Seq)
GSM2341294
ZHBTC4_SOX2_24hDOX_rep2 (ChIP-Seq)
GSM2341295
ZHBTC4_SOX2_24hDOX_rep3 (ChIP-Seq)
GSM2341296
ZHBTC4_NANOG_UNT_rep1 (ChIP-Seq)
GSM2341297
ZHBTC4_NANOG_UNT_rep2 (ChIP-Seq)
GSM2341298
ZHBTC4_NANOG_UNT_rep3 (ChIP-Seq)
GSM2341299
ZHBTC4_NANOG_24hDOX_rep1 (ChIP-Seq)
GSM2341300
ZHBTC4_NANOG_24hDOX_rep2 (ChIP-Seq)
GSM2341301
ZHBTC4_NANOG_24hDOX_rep3 (ChIP-Seq)
GSM2341302
ZHBTC4_BRG1_UNT_rep1 (ChIP-Seq)
GSM2341303
ZHBTC4_BRG1_UNT_rep2 (ChIP-Seq)
GSM2341304
ZHBTC4_BRG1_UNT_rep3 (ChIP-Seq)
GSM2341305
ZHBTC4_BRG1_24hDOX_rep1 (ChIP-Seq)
GSM2341306
ZHBTC4_BRG1_24hDOX_rep2 (ChIP-Seq)
GSM2341307
ZHBTC4_BRG1_24hDOX_rep3 (ChIP-Seq)
GSM2341308
ZHBTC4_Input_UNT_rep1 (ChIP-Seq)
GSM2341309
BRG1fl_OCT4_UNT_rep1 (ChIP-Seq)
GSM2341310
BRG1fl_OCT4_UNT_rep2 (ChIP-Seq)
GSM2341311
BRG1fl_OCT4_UNT_rep3 (ChIP-Seq)
GSM2341312
BRG1fl_OCT4_72hTAM_rep1 (ChIP-Seq)
GSM2341313
BRG1fl_OCT4_72hTAM_rep2 (ChIP-Seq)
GSM2341314
BRG1fl_OCT4_72hTAM_rep3 (ChIP-Seq)
GSM2341315
BRG1fl_SOX2_UNT_rep1 (ChIP-Seq)
GSM2341316
BRG1fl_SOX2_UNT_rep2 (ChIP-Seq)
GSM2341317
BRG1fl_SOX2_UNT_rep3 (ChIP-Seq)
GSM2341318
BRG1fl_SOX2_72hTAM_rep1 (ChIP-Seq)
GSM2341319
BRG1fl_SOX2_72hTAM_rep2 (ChIP-Seq)
GSM2341320
BRG1fl_SOX2_72hTAM_rep3 (ChIP-Seq)
GSM2341321
BRG1fl_Input_UNT_rep1 (ChIP-Seq)
GSM2341322
ZHBTC4_nucRNA_UNT_rep1 (RNA-Seq)
GSM2341323
ZHBTC4_nucRNA_UNT_rep2 (RNA-Seq)
GSM2341324
ZHBTC4_nucRNA_UNT_rep3 (RNA-Seq)
GSM2341325
ZHBTC4_nucRNA_24hDOX_rep1 (RNA-Seq)
GSM2341326
ZHBTC4_nucRNA_24hDOX_rep2 (RNA-Seq)
GSM2341327
ZHBTC4_nucRNA_24hDOX_rep3 (RNA-Seq)
GSM2341328
BRG1fl_nucRNA_UNT_rep1 (RNA-Seq)
GSM2341329
BRG1fl_nucRNA_UNT_rep2 (RNA-Seq)
GSM2341330
BRG1fl_nucRNA_UNT_rep3 (RNA-Seq)
GSM2341331
BRG1fl_nucRNA_72hTAM_rep1 (RNA-Seq)
GSM2341332
BRG1fl_nucRNA_72hTAM_rep2 (RNA-Seq)
GSM2341333
BRG1fl_nucRNA_72hTAM_rep3 (RNA-Seq)
GSM2521508
ZHBTC4_SS18_UNT_rep1
GSM2521509
ZHBTC4_SS18_UNT_rep2
GSM2521510
ZHBTC4_SS18_UNT_rep3
GSM2521511
ZHBTC4_SS18_24hDOX_rep1
GSM2521512
ZHBTC4_SS18_24hDOX_rep2
GSM2521513
ZHBTC4_SS18_24hDOX_rep3
GSM2521514
BRG1fl_BRG1_UNT_rep1
GSM2521515
BRG1fl_BRG1_UNT_rep2
GSM2521516
BRG1fl_BRG1_UNT_rep3
GSM2521517
BRG1fl_BRG1_72hTAM_rep1
GSM2521518
BRG1fl_BRG1_72hTAM_rep2
GSM2521519
BRG1fl_BRG1_72hTAM_rep3
GSM2521520
BRG1fl_NANOG_UNT_rep1
GSM2521521
BRG1fl_NANOG_UNT_rep2
GSM2521522
BRG1fl_NANOG_UNT_rep3
GSM2521523
BRG1fl_NANOG_72hTAM_rep1
GSM2521524
BRG1fl_NANOG_72hTAM_rep2
GSM2521525
BRG1fl_NANOG_72hTAM_rep3
This SuperSeries is composed of the following SubSeries:
GSE87819
The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells [ATAC-Seq]
GSE87820
The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells [ChIP-Seq]
GSE87821
The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells [RNA-Seq]
Relations
BioProject
PRJNA347811
Download family
Format
SOFT formatted family file(s)
SOFT
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TXT
Supplementary file
Size
Download
File type/resource
GSE87822_RAW.tar
208.4 Mb
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TAR (of BW)
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