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Series GSE87660 Query DataSets for GSE87660
Status Public on Jun 12, 2017
Title Low-cost, low-bias and low-input RNA-seq with High Experimental Verifiability based on Semiconductor Sequencing
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We developed a new method on sequencing low-input RNA. This method shows much low-bias with the advantage of semiconductor while competing with smart-seq2. In order to analyze the low-input RNA datasets sensitively, we also develop FANSe2splice with high experimental verification rate as the analysis tool in our method.
Overall design The RNA of HBE and A549 were sequenced in our method. And smart-seq2 was also examined in HBE RNA.
Contributor(s) Mai Z
Citation(s) 28432352
Submission date Oct 05, 2016
Last update date May 15, 2019
Contact name Gong Zhang
Organization name Jinan University
Department Institute of Life and Health Engineering
Lab Translatomics Lab
Street address Huang-Pu Avenue West 601
City Guangzhou
ZIP/Postal code 510632
Country China
Platforms (2)
GPL17303 Ion Torrent Proton (Homo sapiens)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (3)
GSM2337914 HBE_mRNA
GSM2337915 A549_mRNA
GSM2337916 HBE_smartseq2
BioProject PRJNA345493
SRA SRP090893

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE87660_RAW.tar 470.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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