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Series GSE87602 Query DataSets for GSE87602
Status Public on Apr 03, 2017
Title Activation of Lung Macrophages in Hypoxic Pulmonary Hypertension
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Studies in various animal models suggest an important role for pulmonary macrophages in the pathogenesis of pulmonary hypertension (PH). Yet, the molecular mechanisms characterizing the functional macrophage phenotype relative to time and pulmonary localization/compartmentalization remain largely unknown. Here, we utilized a hypoxic murine model of PH in combination with flow cytometry assisted cell sorting (FACS) to quantify and isolate lung macrophages from two compartments over time and characterized their programing via RNA sequencing (RNAseq) approaches. In response to hypoxia, we found an early increase in macrophage number that was restricted to the interstitial/perivascular compartment, without recruitment of macrophages to the alveolar compartment or changes in the number of resident alveolar macrophages. Principle component analysis demonstrated significant differences in overall gene expression between alveolar (AMs) and interstitial macrophages (IMs) at baseline and after 4 and 14 days hypoxic exposure. AM’s at both day 4 and 14 and IM’s at day 4 shared a conserved “hypoxia program” characterized by mitochondrial dysfunction, pro-inflammatory gene activation and mTORC1 signaling, while IM’s at day 14 demonstrated a unique anti-inflammatory/ pro-reparative programming state. We conclude that the pathogenesis of vascular remodeling in hypoxic PH involves an early compartment independent activation of lung macrophages towards a conserved hypoxia program, with the development of compartment specific programs later on in the course of disease. Thus, harnessing time and compartment specific differences in lung macrophage polarization needs to be considered in the therapeutic targeting of macrophages in hypoxic PH and potentially other inflammatory lung diseases.
 
Overall design FACS sorting of lung macrophages from hypoxic mouse lung
 
Contributor(s) Pugliese S, El Kasmi K
Citation(s) 28500078
Submission date Oct 04, 2016
Last update date May 15, 2019
Contact name steve C pugliese
E-mail(s) steven.pugliese@ucdenver.edu
Phone 2158808239
Organization name University of Colorado
Department Medicine
Lab Kurt Stenmark
Street address 12700 East 19th Avenue
City denver
State/province CO
ZIP/Postal code 80206
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (17)
GSM2335005 AM_SL_Rep1
GSM2335006 AM_SL_Rep2
GSM2335007 AM_D4_Rep1
Relations
BioProject PRJNA345360
SRA SRP090809

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE87602_AMD14_vs_AMSL.csv.gz 1.1 Mb (ftp)(http) CSV
GSE87602_AMD4_vs_AMSL.csv.gz 1.2 Mb (ftp)(http) CSV
GSE87602_IMD14_vs_AMSL.csv.gz 1.2 Mb (ftp)(http) CSV
GSE87602_IMD4_vs_IMSL.csv.gz 1.2 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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