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Series GSE87304 Query DataSets for GSE87304
Status Public on May 25, 2017
Title Impact of molecular subtypes in muscle-invasive bladder cancer on predicting response and survival outcome to neoadjuvant chemotherapy: results from a multi-institutional validation study
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Four different molecular classifications of muscle-invasive bladder cancer (MIBC) based on gene expression have been proposed. With the ultimate goal of utilizing these molecular subtypes for personalized treatment, we investigated their significance in the context of neoadjuvant cisplatin-based chemotherapy (NAC).
 
Overall design RNA was isolated from pre-NAC transurethral resection (TUR) specimens from 305 patients with MIBC and whole transcriptome profiling was performed. Samples were classified according to four published molecular subtyping methods.
 
Contributor(s) Seiler R, Ashab HA, Boormans JL, Buerki C, Choeurng V, Choi W, Crabb SJ, Dall’Era M, Davicioni E, Douglas J, Erho N, Fransen van de Putte EE, Gibb EA, Hoadley KA, Kardos J, Kim WY, Kiss B, Lam LL, Lerner SP, McConkey DJ, North S, Palmer-Aronsten B, Sjödahl G, Sommerlad M, Thalmann GN, Todenhöfer T, van der Heijden MS, Van Kessel K, van Rhijn BW, Wang Q, Winters B, Wright J, Zwarthoff EC, Black PC
Citation(s) 28390739
Submission date Sep 23, 2016
Last update date Feb 10, 2019
Contact name Elai Davicioni
E-mail(s) elai@genomedx.com
Organization name GenomeDx
Street address 1152 Mainland St #430
City Vancouver
State/province BC
ZIP/Postal code V6B 4X2
Country Canada
 
Platforms (1)
GPL22995 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version, custom CDF]
Samples (305)
GSM2470226 bladder_cancer_turbt_sample_1
GSM2470227 bladder_cancer_turbt_sample_2
GSM2470228 bladder_cancer_turbt_sample_3
Relations
BioProject PRJNA369003

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE87304_RAW.tar 6.0 Gb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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