|
| Status |
Public on Apr 12, 2017 |
| Title |
Transcriptome changes in mouse livers upon Bmal1 or Nr1d1 knock out and interactome of lnc-Crot by 4C-seq |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Other
|
| Summary |
To explore the circadian regulations of Bmal1, we examined the transcriptome changes in mouse livers upon Bmal1 knock out at two circadian time points, CT0 and CT12. To explore the circadian regulations of Nr1d1, we examined the transcriptome changes in mouse livers upon Nr1d1 knock out at two circadian time points, CT0 and CT12. To explore interactome of lnc-Crot, 4C-seq was performed with lnc-Crot as bait region at CT6 and CT18.
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| |
|
| Overall design |
RNA-seq of WT and KO at CT0 and CT12. 4C-seq at CT6 and CT18.
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| |
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| Contributor(s) |
Fan Z, Yan J |
| Citation(s) |
28335007 |
| |
| Submission date |
Sep 23, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Zenghua Fan |
| Organization name |
University of California, San Francisco
|
| Street address |
1550 4th Street
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
|
| Samples (26)
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| Relations |
| BioProject |
PRJNA344200 |
| SRA |
SRP090360 |
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