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Series GSE87114 Query DataSets for GSE87114
Status Public on Apr 06, 2017
Title Dynamic gene regulatory networks of human myeloid differentiation [ATAC-seq_siRNA]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We utilize gene expression and open chromatin footprinting data to build a gene regulatory network of key transcription factors that capture the cell and time-specific regulatory programs specified during human myeloid differentiation.
Overall design ATAC-seq profiling of undifferentiated HL-60, differentiating macrophage, neutrophil, monocyte, and monocyte-derived macrophage cells.
Contributor(s) Ramirez RN, Mortazavi A
Citation(s) 28365152
Submission date Sep 20, 2016
Last update date May 15, 2019
Contact name Ricardo Noel Ramirez
Organization name University of California Irvine
Department Developmental and Cell Biology
Street address 2300 Biological Sciences III
City Irvine
State/province California
ZIP/Postal code 92697
Country USA
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (8)
GSM2322572 HL60-siPU1 Rep1 ATAC-seq
GSM2322573 HL60-siPU1 Rep2 ATAC-seq
GSM2322574 Mac-24h-siPU Rep1 ATAC-seq
This SubSeries is part of SuperSeries:
GSE79046 Dynamic gene regulatory networks of human myeloid differentiation
BioProject PRJNA343598
SRA SRP090164

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE87114_RAW.tar 677.6 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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