NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE87068 Query DataSets for GSE87068
Status Public on Oct 01, 2017
Title RNA Sequencing Quantitative Analysis of RNA editing sites of Wild Type and ADAR1 editing deficient (ADAR1E861A) murine fetal RNA of various tissues
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The Adar1 deaminase inactive mutant mouse tissue samples were obtain from the Walkley lab as described in http://www.ncbi.nlm.nih.gov/pubmed/26275108. We performed mmPCR-seq on the samples and measured the editing levels of.
 
Overall design Fetal mRNA profiles of E12.5 wild type (WT) and ADAR E861A mutant mice were generated by deep sequencing using Illumina HiSeq 2000.
 
Contributor(s) Tan MH, Li Q, Gupte A, Walkley CR, Li JB
Citation(s) 29022589
Submission date Sep 19, 2016
Last update date May 15, 2019
Contact name Jin Billy Li
E-mail(s) jin.billy.li@stanford.edu
Organization name Stanford University
Department Genetics
Lab Li
Street address 300 Pasteur Dr.
City STANFORD
State/province CA
ZIP/Postal code 94085
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (43)
GSM2320312 Ovary Adar1 +/+ MDA5-/- [JBL241]
GSM2320313 Liver Adar1 +/+ MDA5-/- [JBL242]
GSM2320314 Kidney Adar1 +/+ MDA5-/- [JBL243]
Relations
BioProject PRJNA343426
SRA SRP090108

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE87068_RAW.tar 13.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap