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Series GSE86941 Query DataSets for GSE86941
Status Public on Dec 31, 2018
Title Infiltrating monocyte-derived macrophages polarizes in to anti-inflammatory and neuro-protective phenotype in a rat model of cerebral ischemia
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary To summarize our results, we found microglia and MDMs are functionally heterogeneous population contributing differently to the disease phenotype. Our data, suggest that during post-ischemic inflammation microglia exhibit pro-inflammatory phenotype, while infiltrating MDMs display anti-inflammatory and neuro-protective phenotype. Apart from up-regulation of some of the classical M2 marker in MDMs, our gene expression profiling using RNA-sequencing revealed a unique signature of MDMs with the up-regulation of genes associated with wound healing, MHCII antigen-presentation and tissue repair. Our results strongly suggest that MDMs infiltrating the CNS parenchyma during the sub-acute of post-ischemic inflammation might contribute to the endogenous mechanism of neuroprotection.
 
Overall design RNAseq profilling of sorted microglia and macrophages after MCAO compared to sham
 
Contributor(s) Wojtas B, Karunakaran W
Citation(s) 30485549
Submission date Sep 14, 2016
Last update date Jun 24, 2019
Contact name Bartosz Wojtas
E-mail(s) bartoszwojtas83@gmail.com
Phone 692156006
Organization name Nencki Institute of Experimental Biology
Street address Pasteura 3
City Warsaw
ZIP/Postal code 02-793
Country Poland
 
Platforms (1)
GPL18404 Illumina HiSeq 1500 (Rattus norvegicus)
Samples (21)
GSM3137215 Mg1
GSM3137216 Mg2
GSM3137217 Mg3
Relations
BioProject PRJNA343038
SRA SRP089894

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE86941_RAW.tar 7.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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