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| Status |
Public on Dec 31, 2017 |
| Title |
Simultaneous Genome-Wide Gene Expression and Transcript Isoform Profiling in P. falciaprum using Exon Arrays [NimbleGen] |
| Organism |
Plasmodium falciparum |
| Experiment type |
Expression profiling by array
|
| Summary |
Investigation of whole genome expression profiles during four time points during the intraerythrocytic lifecycle of the malaria parasite Plasmodium falciparum for transcript isoforms using Exon Arrays.
The samples used in this study are further described in Turnbull et. al., Simultaneous Genome-Wide Gene Expression and Transcript Isoform Profiling in the Human Malaria Parasite (in review)
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| Overall design |
Using the Nimblegen platform exon array to measure whole genome expression profiles at four timepoints: 12 hours (4 biological replicates), 24 hours (4 biological and 2 technical replicates), 36 hours (4 biological replicates), and 48 hours (4 biological replicates) post invasion, and the detection of transcript isoforms between 12 hours and 36 hours post invasion.
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| Contributor(s) |
Ferdig MT, Turnbull LB |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Aug 30, 2016 |
| Last update date |
Jan 01, 2018 |
| Contact name |
Michael Ferdig |
| E-mail(s) |
mferdig@nd.edu
|
| Organization name |
University of Notre Dame
|
| Department |
Biological Science
|
| Street address |
100 Galvin Life Science Building
|
| City |
Notre Dame |
| State/province |
IN |
| ZIP/Postal code |
46556 |
| Country |
USA |
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| Platforms (1) |
| GPL22375 |
Nimblegen Plasmodium falciparum 100813_LC_Pfal_5833_expr (locus tag version) |
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| Samples (14)
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| This SubSeries is part of SuperSeries: |
| GSE86255 |
Simultaneous Genome-Wide Gene Expression and Transcript Isoform Profiling in P. falciaprum using Exon Arrays |
|
| Relations |
| BioProject |
PRJNA341296 |
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