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Series GSE85452 Query DataSets for GSE85452
Status Public on Nov 22, 2017
Title Methylation and expression profiles of monocytes in monozygotic twins: role in Myasthenia Gravis [expression profiling]
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Myasthenia gravis (MG) is a relatively rare autoimmune neuromuscular disorder. Monozygotic twin studies indicate that discordance rate in MG is about 70-60%, suggesting that despite identical DNA unknown factors contribute to disease development. The aim of the current study was to identify novel disease-associated genes in purified monocytes, including both genes associated with predisposition or with disease course, using the unique model of MZ twins. Thus the transcriptome and methylome were compared between twins discordant and concordant for the diseases, as well as MG singletons, and healthy controls. Several transcripts associated with immune homeostasis and inflammation resolution were highlighted in the current study. High similarity between the healthy and the MG discordant twins found, suggest that genetic predisposition may have a stronger contribution then previously assumed. In addition, results suggest that numerous small changes in expression and DNA methylation might contribute to disease onset making it more difficult to pick up
 
Overall design The transcriptome and methylome were compared between twins discordant and concordant for Maysthenia Gravis, as well as MG singletons, and healthy controls
 
Contributor(s) Mamrut S, Avidan N, Truffault F, Staun-Ram E, Frenkian M, Berrih-Aknin S, Miller A
Citation(s) 28549776
Submission date Aug 10, 2016
Last update date Aug 13, 2018
Contact name Sonia Berrih-Aknin
E-mail(s) sonia.berrih-aknin@upmc.fr
Organization name UPMC - Inserm UMRS 974, CNRS FRE3617
Department Sorbonne Universités
Lab Center of Research in Myology
Street address 105 Boulevard de l’Hôpital
City Paris
State/province State...
ZIP/Postal code 75651
Country France
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (25)
GSM2267264 F49CD14
GSM2267265 F33CD14
GSM2267266 F52CD14
This SubSeries is part of SuperSeries:
GSE85649 Methylation and expression profiles of monocytes in monozygotic twins: role in Myasthenia Gravis
Relations
BioProject PRJNA338489

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE85452_GEX_Monocyte_SamplesSheet.csv.gz 475 b (ftp)(http) CSV
GSE85452_Loess_normalized_data_with_annotation.txt.gz 2.3 Mb (ftp)(http) TXT
GSE85452_Non-normalized_data.txt.gz 5.3 Mb (ftp)(http) TXT
GSE85452_RAW.tar 66.2 Mb (http)(custom) TAR (of IDAT)
Processed data included within Sample table

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