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Series GSE85039 Query DataSets for GSE85039
Status Public on Jun 30, 2017
Title A multi-scale model for hair follicle reveals heterogeneous skin domains drive rapid spatiotemporal hair growth patterning
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We report transcriptomes of whole skin from different anatomic regions, dorsum, ventrum, chin and ear pinna, as well as ear cartilage/muscle complex at different post-natal time points. Whole tissue was microdissected from wild type mice.
Overall design Examination of miscrodissected whole skin from dorsum, ventrum and chin at six consecutive time points of the hair cycle, and comparison of ear pinna telogen skin vs. ear cartilage/muscle complex vs. dorsal telogen skin.

Sample definition:
CCT Chin skin, Competent telogen
CEA Chin skin, Early anagen
CMA Chin skin, Mid-anagen
CLA Chin skin, Late anagen
CC Chin skin, Catagen
CRT Chin skin, Refractory telogen
VCT Ventral skin, Competent telogen
VEA Ventral skin, Early anagen
VMA Ventral skin, Mid-anagen
VLA Ventral skin, Late anagen
VC Ventral skin, Catagen
VRT Ventral skin, Refractory telogen
DCT Dorsal skin, Competent telogen
DEA Dorsal skin, Early anagen
DMA Dorsal skin, Mid-anagen
DLA Dorsal skin, Late anagen
DC Dorsal skin, Catagen
DRT Dorsal skin, Refractory telogen
ERST Ear skin, Telogen
LC Ear cartilage/muscle complex
Contributor(s) Plikus MV, Nie Q, Oh J, Wang Q, Lee H, Peng T
Citation(s) 28695824
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 AR067273 Induction of fat regeneration in skin wounds by hair follicle signaling The Regents of the University of California Plikus
P50 GM076516 Develop new mathematical and computational tools for modeling: Math & Computational Core The Regents of the University of California Nie
R01 GM107264 Stochastic Dynamics and Noise Control in Patterning Systems The Regents of the University of California Nie
Submission date Aug 01, 2016
Last update date May 15, 2019
Contact name Maksim V Plikus
Phone 949-824-1260
Organization name University of California, Irvine
Department Developmental and Cell Biology
Street address 845 Health Sciences Road
City Irvine
State/province California
ZIP/Postal code 92697
Country USA
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (48)
GSM2256671 CC rep1
GSM2256672 CC rep2
GSM2256673 CC rep3
BioProject PRJNA336009
SRA SRP080746

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE85039_Ear_pinna_RNAseq_fpkm.txt.gz 707.7 Kb (ftp)(http) TXT
GSE85039_Skin_domains_RNAseq_fpkm.txt.gz 2.3 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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