|
| Status |
Public on Apr 07, 2017 |
| Title |
Transcriptomic approach for understanding molecular mechanisms of in situ environmental toxicity of Hg using an aquatic microalgae and a macrophyte |
| Organisms |
Chlamydomonas reinhardtii; Elodea nuttallii |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The present study aimed to evaluate the use of transcriptomic analyses of two primary producers to assess the impact of Hg environmental pollution in aquatic primary producers.
|
| |
|
| Overall design |
2h exposure in situ.
|
| |
|
| Contributor(s) |
Dranguet P, Cosio C |
| Citation missing |
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| |
| Submission date |
Jul 29, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Natacha Civic |
| E-mail(s) |
natacha.civic@unige.ch
|
| Organization name |
University of Geneva
|
| Department |
iGE3 Genomics Platform
|
| Lab |
University of Geneva
|
| Street address |
Rue Michel-Servet 1
|
| City |
Geneva |
| ZIP/Postal code |
1211-4 |
| Country |
Switzerland |
| |
|
| Platforms (2) |
| GPL18482 |
Illumina HiSeq 2500 (Chlamydomonas reinhardtii) |
| GPL22260 |
Illumina HiSeq 2500 (Elodea nuttallii) |
|
| Samples (18)
|
|
| Relations |
| BioProject |
PRJNA335844 |
| SRA |
SRP080339 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE84995_DEG_EB1_vs_EB2_FC2_FDR5.xlsx |
344.9 Kb |
(ftp)(http) |
XLSX |
| GSE84995_DEG_EB1_vs_EV_FC2_FDR5.xlsx |
814.9 Kb |
(ftp)(http) |
XLSX |
| GSE84995_DEG_EB2_vs_EV_FC2_FDR5.xlsx |
1.1 Mb |
(ftp)(http) |
XLSX |
| GSE84995_DEG_Site1_vs_Control_FDR5_FC2.xlsx |
179.0 Kb |
(ftp)(http) |
XLSX |
| GSE84995_DEG_Site2_vs_Control_FDR5_FC2.xlsx |
487.2 Kb |
(ftp)(http) |
XLSX |
| GSE84995_DEG_Site2_vs_Site1_FDR5_FC2.xlsx |
367.4 Kb |
(ftp)(http) |
XLSX |
| GSE84995_Elodea_muttallii.fasta.gz |
25.1 Mb |
(ftp)(http) |
FASTA |
| GSE84995_normalized_counts_edgeR_cpm_Chlamy.xlsx |
1.9 Mb |
(ftp)(http) |
XLSX |
| GSE84995_normalized_counts_edgeR_cpm_Ellodea.xlsx |
6.0 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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