|
| Status |
Public on Jun 09, 2017 |
| Title |
Compared performance of Affymetrix HTA arrays and Illumina RNAseq for the analysis of tumours [RNA-seq] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Here we compared the performance of Affymetrix HTA 2.0 microarray and Illumina 2000 RNA-sequencing techniques on the clinical samples collected from patients with lung squamous cell carcinoma.
|
| |
|
| Overall design |
Comparison of transcriptome (9 tumor and 9 adjacent tissue samples) in RNA-seq and microarray.
|
| |
|
| Contributor(s) |
Nazarov PV, Muller A, Kaoma T, Nicot N, Ghoneim C, Vallar L |
| Citation(s) |
28587590 |
| |
| Submission date |
Jul 25, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Arnaud Muller |
| E-mail(s) |
arnaud.muller@lih.lu, arnaud.muller@lns.etat.lu
|
| Organization name |
LIH
|
| Department |
DONC
|
| Lab |
GENPRO
|
| Street address |
84 Val Fleuri
|
| City |
Luxembourg |
| ZIP/Postal code |
1526 |
| Country |
Luxembourg |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (18)
|
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| This SubSeries is part of SuperSeries: |
| GSE84788 |
Compared performance of Affymetrix HTA arrays and Illumina RNAseq for the analysis of tumours |
|
| Relations |
| BioProject |
PRJNA331133 |
| SRA |
SRP079676 |
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