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| Status |
Public on Dec 01, 2016 |
| Title |
The histone deacetylase inhibitor Suberoylanilide Hydroxamic Acid (SAHA) alleviates salinity stress in cassava (Manihot esculenta Crantz) |
| Organism |
Manihot esculenta |
| Experiment type |
Expression profiling by array
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| Summary |
To elucidate the molecular mechanism involved in increased tolerance to high-salinity stress by the application of HDAC inhibitor named SAHA
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| Overall design |
Cassava cultivar TMS6044 was asexually propagated in a plastic pot with MS medium. The 5-cm length shoot top of 3-month-old cassava plantlets were cut and then transferred to liquid MS media without agar. After one week incubation, the plantlets showing root elongation were treated with 100 µM SAHA for 24 h, followed by treatment with 200 mM NaCl for 2 and 24 h. 100 ng of total RNA were used.
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| Contributor(s) |
Patanun O, Ueda M, Itouga M, Utsumi Y, Matsui A, Tanaka M, Utsumi C, Sakakibara H, Yoshida M, Narangajavana J, Seki M |
| Citation |
Patanun O, Ueda M, Itouga M, Kato Y, Utsumi Y, Matsui A, Tanaka M, Utsumi C, Sakakibara H, Yoshida M, Narangajavana J and Seki M. The Histone Deacetylase Inhibitor Suberoylanilide Hydroxamic Acid Alleviates Salinity Stress in Cassava. Front. Plant Sci. 2017;7:2039. doi: 10.3389/fpls.2016.02039
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| Submission date |
Jul 22, 2016 |
| Last update date |
Jan 10, 2017 |
| Contact name |
Onsaya Patanun |
| E-mail(s) |
chill-chill13@hotmail.com
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| Phone |
6622015319
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| Organization name |
Mahidol university
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| Department |
Biotechnology
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| Lab |
Plant Biochemistry and Molecular Genetics Laboratory
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| Street address |
Rama6 rd. Phayathai
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| City |
Phayathai |
| State/province |
Bangkok |
| ZIP/Postal code |
10400 |
| Country |
Thailand |
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| Platforms (1) |
| GPL22197 |
Agilent-034519 Manihot esculenta microarray (probe name version) |
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| Samples (36)
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| GSM2248280 |
R+SAHA_1 |
| GSM2248281 |
R+SAHA_2 |
| GSM2248282 |
R+SAHA_3 |
| GSM2248283 |
R-SAHA, 2h NaCl_1 |
| GSM2248284 |
R-SAHA, 2h NaCl_2 |
| GSM2248285 |
R-SAHA, 2h NaCl_3 |
| GSM2248286 |
R+SAHA, 2h NaCl_1 |
| GSM2248287 |
R+SAHA, 2h NaCl_2 |
| GSM2248288 |
R+SAHA, 2h NaCl_3 |
| GSM2248289 |
R-SAHA, 24h NaCl_1 |
| GSM2248290 |
R-SAHA, 24h NaCl_2 |
| GSM2248291 |
R-SAHA, 24h NaCl_3 |
| GSM2248292 |
R+SAHA, 24h NaCl_1 |
| GSM2248293 |
R+SAHA, 24h NaCl_2 |
| GSM2248294 |
R+SAHA, 24h NaCl_3 |
| GSM2248295 |
L-SAHA_1 |
| GSM2248296 |
L-SAHA_2 |
| GSM2248297 |
L-SAHA_3 |
| GSM2248298 |
L+SAHA_1 |
| GSM2248299 |
L+SAHA_2 |
| GSM2248300 |
L+SAHA_3 |
| GSM2248301 |
L-SAHA, 2h NaCl_1 |
| GSM2248302 |
L-SAHA, 2h NaCl_2 |
| GSM2248303 |
L-SAHA, 2h NaCl_3 |
| GSM2248304 |
L+SAHA, 2h NaCl_1 |
| GSM2248305 |
L+SAHA, 2h NaCl_2 |
| GSM2248306 |
L+SAHA, 2h NaCl_3 |
| GSM2248307 |
L-SAHA, 24h NaCl_1 |
| GSM2248308 |
L-SAHA, 24h NaCl_2 |
| GSM2248309 |
L-SAHA, 24h NaCl_3 |
| GSM2248310 |
L+SAHA, 24h NaCl_1 |
| GSM2248311 |
L+SAHA, 24h NaCl_2 |
| GSM2248312 |
L+SAHA, 24h NaCl_3 |
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| Relations |
| BioProject |
PRJNA330922 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE84715_RAW.tar |
340.8 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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