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Series GSE83332 Query DataSets for GSE83332
Status Public on Jan 12, 2017
Title Epidermis-specific ribosome profiling to describe the translational landscape of SOX2
Organism Mus musculus
Experiment type Other
Expression profiling by high throughput sequencing
Summary SOX2 signalling is required SCC initiation and maintenance. Ribosome profiling was used to describe the translational landscape of WT and SOX2 overexpressing P4 epidermis.
 
Overall design Mouse P4 WT and SOX2 epidermis was isolated for ribosome profiling and RNAseq. Furthermore, cultured WT, SOX2 and HRASG12V; TGFBR-2 KO keratinocytes were used for ribosome profiling.
 
Contributor(s) Sendoel A, Fuchs E
Citation(s) 28077873
Submission date Jun 14, 2016
Last update date May 15, 2019
Contact name Ataman Sendoel
Organization name Rockefeller University
Street address York Avenue
City New York
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (30)
GSM2199581 Rib.prof. WT P4 in vivo rep 0
GSM2199582 Rib.prof. WT P4 in vivo rep 1
GSM2199583 Rib.prof. WT P4 in vivo rep 2
Relations
BioProject PRJNA325618
SRA SRP076538

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83332_RAW.tar 72.9 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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