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Series GSE83189 Query DataSets for GSE83189
Status Public on Jun 10, 2016
Title PyMT 4 stages tumor progression microRNA sequencing
Organism Mus musculus
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary We sequenced mammary gland samples of MMTV-PyMT mouse from 4 stages (hyperplasia at week 6, adenoma/MIN at week 8, early carcinoma at week 10, and late carcinoma with lung metastasis at week 12) during tumor progression.
 
Overall design We sacrificed 3 PyMT (FVB background) mice and 3 FVB control mice at each of the 4 stages, extracted small RNA and performed sequencing.
 
Contributor(s) Nogales-Cadenas R, Cai Y, Zhang Q, Lin J, Zhang W, Zhang Z
Citation(s) 27449149
Submission date Jun 09, 2016
Last update date May 15, 2019
Contact name ying cai
Organization name Albert Einstein College of Medicine
Street address 1300 morris park ave
City bronx
State/province New York
ZIP/Postal code 10461
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (24)
GSM2195858 pymt-6wk-miRNAseq-rep1
GSM2195859 fvb-6wk-miRNAseq-rep1
GSM2195860 pymt-8wk-miRNAseq-rep1
Relations
BioProject PRJNA325280
SRA SRP076396

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83189_miRNA_chart.csv.gz 14.4 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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