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Series GSE83139 Query DataSets for GSE83139
Status Public on Jul 05, 2016
Title Single cell RNA-seq of human pancreatic endocrine cells from Juvenile, adult control and type 2 diabetic donors.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We successfully sequenced and annotated more than 400 cells from child, adult control, type 1 diabetes and type 2 diabetes donors. We detect donor-type specific transcript variation. We also report that cells from child donors have less defined gene signature. Cells from type 2 diabetes donors resemble juvenile cells in gene expression.
 
Overall design Cells from three adult controls (56, 74, 92), one donor with type 1 diabetes (91), two donors with type 2 diabetes (75, 143), and two child donors (40, 72) were sequenced. Numbers in parathesis indicates number of cells sequenced.
 
Contributor(s) Wang YJ, Schug J, Golson ML, Won K, Liu C, Naji A, Avrahami D, Kaestner KH
Citation(s) 27364731
Submission date Jun 08, 2016
Last update date Oct 01, 2020
Contact name Jonathan Schug
E-mail(s) jschug@pennmedicine.upenn.edu
Phone 215 898 0773
Organization name University of Pennsylvania
Department School of Medicine
Lab Next-Generation Sequencing Core
Street address 12-156 Smilow Ctr Trans Research
City Philadelphia
State/province Pennsylvania
ZIP/Postal code 19104-5160
Country USA
 
Platforms (2)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (635)
GSM2194190 AAJF122 12730
GSM2194191 AAJF122 12731
GSM2194192 AAJF122 12732
Relations
BioProject PRJNA325005
SRA SRP076307

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83139_tbx-v-f-norm-ntv-cpms.csv.gz 46.0 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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