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Series GSE82164 Query DataSets for GSE82164
Status Public on Jun 01, 2017
Title Whole transcriptome analysis of diaphragms from FKRPP448L-NSG and NSG mice induced by swimming exercise
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Muscle pre-injury is commonly used prior to cell transplantation to enhance engraftment and to further promote homing of injected cells to diseased muscles. To better understand the changes that occurred in the diaphragm upon swimming (1hour/day for 2 weeks), we analyzed global changes using RNA-Seq in dystrophic FKRPP448L-NSG mice as well as in NSG control mice.
 
Overall design Diaphragm mRNA profiles of 8-10 week old FKRPP448L-NSG and NSG mice were generated by deep sequencing, in triplicate.
 
Contributor(s) Magli A, Perlingeiro R
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Submission date Jun 02, 2016
Last update date May 15, 2019
Contact name Alessandro Magli
E-mail(s) alemagli@gmail.com
Organization name University of Minnesota
Department Medicine
Street address 2231 6th St SE
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (12)
GSM2185174 Swum FKRPP448L-NSG - rep1 (#6752)
GSM2185175 Swum FKRPP448L-NSG - rep2 (#6759)
GSM2185176 Swum FKRPP448L-NSG - rep3 (#6758)
Relations
BioProject PRJNA324233
SRA SRP076021

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE82164_Cuffdiff_gene_FPKM_tracking.tabular.txt.gz 1.3 Mb (ftp)(http) TXT
GSE82164_Cuffdiff_gene_differential_expression_testing.tabular.txt.gz 4.7 Mb (ftp)(http) TXT
GSE82164_Cuffdiff_transcript_FPKM_tracking.tabular.txt.gz 1.8 Mb (ftp)(http) TXT
GSE82164_Cuffdiff_transcript_differential_expression_testing.tabular.txt.gz 6.4 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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