|
| Status |
Public on Jun 24, 2016 |
| Title |
Identification of an NKX3.1-G9a-UTY regulatory network that controls prostate differentiation (Human_RWPE1_RNA-Seq) |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Analysis of transcriptome of human RWPE1 cells over-expressing wild type NKX3.1 and mutant NKX3.1 (T164A).
|
| |
|
| Overall design |
Total RNA obtained from RWPE1 cells engineered with empty vector (altered pTRIPZ), NKX3.1 wild type over-expression, and NKX3.1 (T164A) mutant over-expression. Engineered RWPE1 cells were harvested and processed for RNA isolation and transcriptome analysis using the MagMAX RNA isolation kit (Ambion).
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| |
|
| Contributor(s) |
Dutta A, Le Magnen C, Mitrofanova A, Abate-Shen C |
| Citation(s) |
27339988 |
| |
| Submission date |
May 13, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Antonina Mitrofanova |
| E-mail(s) |
mitrofanova.antonina@hotmail.com
|
| Organization name |
Rutgers University
|
| Street address |
65 Bergen Street, Rm 923B
|
| City |
Newark |
| State/province |
NJ |
| ZIP/Postal code |
07107 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (16)
|
| GSM2152529 |
RWPE1 - Control Vector, CAD4 |
| GSM2152530 |
RWPE1 - Control Vector, CAD5 |
| GSM2152531 |
RWPE1 - Control Vector, CAD6 |
| GSM2152532 |
RWPE1 - NKX3.1, CAD13 |
| GSM2152533 |
RWPE1 - NKX3.1, CAD14 |
| GSM2152534 |
RWPE1 - NKX3.1, CAD15 |
| GSM2152535 |
RWPE1 - NKX3.1, CAD16 |
| GSM2152536 |
RWPE1 - NKX3.1, CAD17 |
| GSM2152537 |
RWPE1 - NKX3.1, CAD18 |
| GSM2152538 |
RWPE1- NKX3.1 (T164A), CAD91 |
| GSM2152539 |
RWPE1- NKX3.1 (T164A), CAD92 |
| GSM2152540 |
RWPE1- NKX3.1 (T164A), CAD93 |
| GSM2152541 |
RWPE1- NKX3.1 (T164A), CAD94 |
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| This SubSeries is part of SuperSeries: |
| GSE81440 |
Identification of an NKX3.1-G9a-UTY regulatory network that controls prostate differentiation |
|
| Relations |
| BioProject |
PRJNA321542 |
| SRA |
SRP075117 |
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