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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 21, 2016 |
| Title |
Primary cancer cell culture: mammary-optimized versus conditional-reprogramming [RNA-seq] |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Experiments used RNAseq data to compare transcriptomes of primary cells from different genetic backgrounds cultured under EpiCult and CRC conditions to each other and to allografts grown from these primary cells in nude mice
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| Overall design |
Paired-end mRNA-seq with WT, Esr1 over-expressing (CERM, tetracycline-operator(tet-op)-Esr1MMTV-rtTA), CYP19A1 over-expressing (AROM, tet-op-CYP19A1MMTV-rtTA) and Brca1 KO (BRCA, Brca1fl11/fl11/MMTV-Cre/p53+/- ) mice
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| Contributor(s) |
Alamri AM, Kang K, Groeneveld S, Wang W, Zhong X, Kallakury B, Hennighausen L, Liu X, Furth PA, Hennighausen L |
| Citation(s) |
27267121 |
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| Submission date |
May 06, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Keunsoo Kang |
| E-mail(s) |
kangk1204@gmail.com
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| Organization name |
Dankook University
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| Street address |
119 Dandae-ro
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| City |
Cheonan |
| ZIP/Postal code |
31119 |
| Country |
South Korea |
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| Platforms (1) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
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| Samples (22)
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| Relations |
| BioProject |
PRJNA320893 |
| SRA |
SRP074491 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE81212_5504CD_FPKM_table.txt.gz |
485.2 Kb |
(ftp)(http) |
TXT |
| GSE81212_Cuffnorm_FPKM_table.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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