NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE81071 Query DataSets for GSE81071
Status Public on Jul 03, 2017
Title Gene expression from human discoid (DLE) and subacute (sCLE) cutaneous lupus subtypes
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Cutaneous lupus erythematosus (CLE) is a disfiguring disease that can exist as an independent entity or as a manifestation of systemic lupus erythematosus (SLE) where up to 70% of patients experience lesions during their disease course. Subacute CLE (sCLE) is an inflammatory lesion with associated erythema in papulosquamous or annular formations. Typically, sCLE does not scar but depigmentation can occur. Importantly, sCLE is associated with a higher progression to SLE. Discoid lesions (DLE) are often circular and frequently lead to alopecia and scar formation. sCLE lesions have a higher propensity for photoprovocation and a more robust inflammatory infiltrate following ultraviolet (UV) B exposure. The pathogenic mechanisms which govern the differences between DLE and sCLE remain poorly defined, and this is reflected by the refractory nature of cutaneous lesions to usual lupus therapies. In this study, we evaluated the transcriptional profiles of 26 DLE and 23 sCLE biopsies and compared them to control skin and to each other in order to develop a comprehensive understanding of the similarities and differences between these two clinical subtypes.
 
Overall design RNA from FFPE blocks of skin biopsies was extracted and processed for hybridization on Affymetrix microarrays.
 
Contributor(s) Berthier CC, Tsoi LC, Reed TJ, Stannard JN, Myers EM, Namas R, Xing X, Lazar S, Lowe L, Kretzler M, Gudjonsson JE, Kahlenberg JM
Citation(s) 28564495, 30996136, 30745462, 30021804, 34868043
Submission date May 03, 2016
Last update date Dec 14, 2021
Contact name Celine C Berthier
Organization name University of Michigan
Street address 1150 W. Medical Center Dr, MSRB2
City Ann Arbor
State/province MI
ZIP/Postal code 48109
Country USA
 
Platforms (1)
GPL19983 [HuGene-2_1-st] Affymetrix Human Gene 2.1 ST Array [HuGene21st_Hs_ENTREZG_19.0.0]
Samples (103)
GSM2142137 Normal skin_H1_023_N
GSM2142138 Normal skin_H1_024_N
GSM2142139 Normal skin_H1_025_N
Relations
BioProject PRJNA320416

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE81071_Normalized_data_with_annotation.txt.gz 7.0 Mb (ftp)(http) TXT
GSE81071_RAW.tar 411.0 Mb (http)(custom) TAR (of CEL)
GSE81071_batch-corrected_matrix.txt.gz 14.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap