|
| Status |
Public on Feb 15, 2018 |
| Title |
CpG island mediated linear and spatial gene partitioning (other data sets) |
| Sample organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Third-party reanalysis
Other
Methylation profiling by high throughput sequencing
|
| Summary |
In order to elucidate the general rules for gene localization and regulation mediated by CpG islands, we reanalyzed diverse published data of DNaseI-seq, MeDIP-seq, LMNB1-DamID-seq, PolII ChIA-pet, and Hi-C analysis.
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| |
|
| Overall design |
DNaseI-seq, MeDIP-seq, LMNB1-DamID-seq, PolII ChIA-pet, and Hi-C analysis
|
| |
|
| Contributor(s) |
Kim J, Beck S |
| Citation(s) |
29529258 |
| |
| Submission date |
Apr 28, 2016 |
| Last update date |
May 17, 2018 |
| Contact name |
Jonghwan Kim |
| E-mail(s) |
jybella@utexas.edu
|
| Phone |
512-232-8046
|
| Organization name |
University of Texas at Austin
|
| Department |
Department of Molecular Cell and Developmental Biology, Institute for Cellular and Molecular Biology
|
| Lab |
Kim Lab
|
| Street address |
2506 Speedway NMS 4.246
|
| City |
Austin |
| State/province |
TX |
| ZIP/Postal code |
78712 |
| Country |
USA |
| |
|
| This SubSeries is part of SuperSeries: |
| GSE80799 |
Implications of CpG islands on chromosomal architectures and modes of global gene regulation |
|
| Relations |
| Reanalysis of |
GSM1014154 |
| Reanalysis of |
GSM1122838 |
| Reanalysis of |
GSM1019697 |
| Reanalysis of |
GSM1019693 |
| Reanalysis of |
GSM970209 |
| Reanalysis of |
GSM970210 |
| Reanalysis of |
GSM970211 |
| Reanalysis of |
GSM970213 |
| Reanalysis of |
GSM862722 |
| BioProject |
PRJNA319990 |
