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Series GSE79739 Query DataSets for GSE79739
Status Public on Mar 29, 2017
Title Enhancer and transcriptomic changes in skeletal muscles in response to physical exercise
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary We address the transcriptomic changes in skeletal muscle after bouts of exercise
 
Overall design We performed RNA-seq and GRO-seq in mouse after treadmill running in both WT and HDAC3-depleted skeletal muscles.
 
Contributor(s) Sun Z, Fang B, Damle M
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 30, 2016
Last update date May 15, 2019
Contact name Bin Fang
E-mail(s) binfang@mail.med.upenn.edu
Organization name University of Pennsylvania
Lab Mitch Lazar
Street address 3400 Civic Center Blvd, Bldg 42
City Philadelphia
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (16)
GSM2101807 WT Rest_RNA-seq 1
GSM2101808 WT Rest_RNA-seq 2
GSM2101809 WT Rest_RNA-seq 3
Relations
BioProject PRJNA316866
SRA SRP072574

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE79739_RAW.tar 841.4 Mb (http)(custom) TAR (of BIGWIG)
GSE79739_WT_vs_HDAC3KO_exercise_gene_exp_cuffdiff.txt.gz 774.8 Kb (ftp)(http) TXT
GSE79739_WT_vs_HDAC3KO_rest_gene_exp_cuffdiff.txt.gz 657.6 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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